Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54810 149 / 1e-41 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08010 135 / 1e-36 GATA GATA11 GATA transcription factor 11 (.1.2) AT1G08000 127 / 1e-33 GATA GATA10 GATA transcription factor 10 (.1.2) AT4G32890 123 / 5e-32 GATA GATA9 GATA transcription factor 9 (.1) AT5G25830 122 / 1e-31 GATA GATA12 GATA transcription factor 12 (.1) AT3G24050 120 / 2e-31 GATA GATA1 GATA transcription factor 1 (.1) AT5G66320 121 / 5e-31 GATA GATA5 GATA transcription factor 5 (.1.2) AT2G45050 119 / 5e-31 GATA GATA2 GATA transcription factor 2 (.1) AT3G60530 118 / 7e-31 GATA GATA4 GATA transcription factor 4 (.1) AT3G51080 117 / 6e-30 GATA GATA6 GATA transcription factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009227 [exp] 524 / 0 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011430 [exp] 129 / 2e-34 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 129 / 3e-34 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10021466 [exp] 127 / 7e-34 AT1G08010 157 / 2e-46 GATA transcription factor 11 (.1.2) Lus10016092 [exp] 126 / 8e-34 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10037398 [exp] 126 / 2e-33 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10028178 [exp] 125 / 5e-33 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10031096 [exp] 118 / 3e-32 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10023684 [exp] 119 / 7e-32 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223300 [exp] 276 / 3e-90 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.008G038900 [exp] 273 / 3e-89 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G211800 [exp] 130 / 1e-34 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.014G058600 [exp] 122 / 2e-32 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.009G123400 [exp] 124 / 3e-32 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.001G188500 [exp] 123 / 3e-32 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.002G142800 [exp] 122 / 3e-32 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 125 / 4e-32 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.013G059600 [exp] 123 / 4e-32 AT5G25830 128 / 1e-34 GATA transcription factor 12 (.1) Potri.006G237700 [exp] 124 / 5e-32 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10037994 pacid=23163727 polypeptide=Lus10037994 locus=Lus10037994.g ID=Lus10037994.BGIv1.0 annot-version=v1.0 ATGGTTGGACAGACAACATCATCATCATCCTTGAATTTCATGGAAGAGCTCGACTTCTTTGACCAAATGGACGACCTCATCGACTTCCCATCAGACGACC TCATCGACTTCCCCTCCGACGACATCGACGCCATTCTTTCCTGCCCCGGCGGCGGCGACGCCGTCAAACCCAATTTCTTCTCCGCTGCCGACAACAAAAC CGACGATGACGGTACCAGCTCATTCCTTCCGCCCAGCATTTGGGCCGCTCACCCGGGTTCCGACCCGGGTTTCCCCAACCACAGCGCCTCCGACCTCTCC GCTGAGCTGTCCGTTCCGTATGAGGACATAGTTCAGCTGGAATGGCTATCAACATTTGTGGAGGATTCCTTCTCTGGAGGAAGCCTCACCATGGACAAGA ACGGGTGTTCTTCGTTCCTGGACAAGGACTTGTCATCCTCGTTGTCCCATGGTCAACACTTTCGTACCTCGAGCCCTGTGTCGGTCCTTGAGAGCAGCAG CTCTTGCTCGGGGGACCAGAAGGCAGAGGCCAATGTGGGTGCGGGGAAATGTGGGAGAGCTCGTAGCAAGCGACCTAGACCGGCAACCTTCACTCCCCGG CCACCAATGCAGCATCTTATCTCCCCGACCTCATCGATTACCGAGACAGTAACCCCCAATGGAGTGTGCCTTGCTCCCAAGGCTCATTCTGATTCGGAGA ACTATGCTGAGTCTCGCCTTCTCATCAAGATCCCCAAGCACCTACTCTCGGAACATAAGACTGAGCCCAAGAAGAAGAAGAAGAAGGTCAAGGTGACTGC TCCTACCCCACCTGCTCCTGCTCGTGAGGAGGAAAGCAACAATTCGGAGCAACAGCAACAGCAGCAGGCAGTGAGGAAATGCATGCATTGTGAGGTGACA AAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAGACACTCTGCAATGCTTGTGGAGTGAGGTTCAAGTCTGGCCGTCTTTTCCCCGAATATCGTC CTGCTGCAAGTCCCACCTTTGTTCCAACCCTGCATTCCAATTCTCACAAGAAGGTGGTTGAGATGAGAACCAAGGTGGCTGGTGATGAAATGTTTGGCAT TGATGATGGTTCTATGATTCCGGACTCACCGGAGCTGCTCATTCCCGGCAACAATCTTGCCTTGGAAGAATACATGTGA
AA sequence Show only first row Show all	>Lus10037994 pacid=23163727 polypeptide=Lus10037994 locus=Lus10037994.g ID=Lus10037994.BGIv1.0 annot-version=v1.0 MVGQTTSSSSLNFMEELDFFDQMDDLIDFPSDDLIDFPSDDIDAILSCPGGGDAVKPNFFSAADNKTDDDGTSSFLPPSIWAAHPGSDPGFPNHSASDLS AELSVPYEDIVQLEWLSTFVEDSFSGGSLTMDKNGCSSFLDKDLSSSLSHGQHFRTSSPVSVLESSSSCSGDQKAEANVGAGKCGRARSKRPRPATFTPR PPMQHLISPTSSITETVTPNGVCLAPKAHSDSENYAESRLLIKIPKHLLSEHKTEPKKKKKKVKVTAPTPPAPAREEESNNSEQQQQQQAVRKCMHCEVT KTPQWRAGPMGPKTLCNACGVRFKSGRLFPEYRPAASPTFVPTLHSNSHKKVVEMRTKVAGDEMFGIDDGSMIPDSPELLIPGNNLALEEYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	0	1
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	1.0	0.9281
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	2.0	0.8583
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	4.2	0.8553
AT2G43180			Phosphoenolpyruvate carboxylas...		Lus10025529 [exp]	5.7	0.8183
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	6.3	0.8240
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	7.1	0.8325
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	8.0	0.8042
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	8.1	0.8150
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	8.2	0.8447
AT3G15470			Transducin/WD40 repeat-like su...		Lus10039933 [exp]	12.6	0.8006

Compare expression of checked genes

Lus10037994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.