Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47840 315 / 1e-109 AMK2 adenosine monophosphate kinase (.1) AT5G35170 232 / 1e-73 adenylate kinase family protein (.1.2) AT5G63400 122 / 1e-34 ADK1 adenylate kinase 1 (.1.2) AT5G50370 113 / 5e-31 Adenylate kinase family protein (.1) AT5G26667 102 / 3e-27 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G25280 100 / 6e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37250 94 / 3e-23 ADK, ATPADK1 adenosine kinase (.1) AT3G60180 90 / 2e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G39270 89 / 2e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 51 / 8e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009478 [exp] 300 / 1e-105 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10009228 [exp] 303 / 2e-105 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10003504 [exp] 291 / 2e-100 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10036326 [exp] 224 / 2e-71 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10019071 [exp] 182 / 4e-54 AT5G35170 720 / 0.0 adenylate kinase family protein (.1.2) Lus10016757 [exp] 122 / 2e-34 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 120 / 8e-34 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10031611 [exp] 95 / 3e-24 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10023476 [exp] 96 / 8e-24 AT2G37250 407 / 2e-144 adenosine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103400 [exp] 332 / 2e-116 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 327 / 2e-114 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 231 / 5e-73 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.006G189201 [exp] 125 / 3e-37 AT5G35170 158 / 1e-46 adenylate kinase family protein (.1.2) Potri.012G095300 [exp] 119 / 2e-33 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 119 / 4e-33 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.002G134600 [exp] 97 / 5e-25 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G043300 [exp] 97 / 6e-25 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G129000 [exp] 97 / 7e-25 AT4G25280 301 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G104700 [exp] 95 / 4e-24 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Lus10037995 pacid=23163797 polypeptide=Lus10037995 locus=Lus10037995.g ID=Lus10037995.BGIv1.0 annot-version=v1.0 ATGGCGGACCCGCCTCTTAGAATCATGATTTCAGGTGCTCCTGCCTCTGGTAAAGGTACCCAGTGTGAGCTCATTACTAAAAAGTACAGCTTGGTGCACA TTGCAGCTGGAGATCTGCTTCGAGCTGAAATCGCTTTCGGAAGTGAGAATGGTAAGCAGGCAAAAGAATACATGGAGAAAGGTCAGCTGGTCCCAGATGA AATAGTTGTGATGATGGTGAAGGACCGGTTGATGCAGCCTGACTCGCAAGAAAATGGCTGGCTGTTAGATGGATATCCACGGAGCTCGTCTCAAGCTACT GCTCTCAAGGGATATGGCTTCGAACCCGATATTTTCATTGTCTTACAAGTCCCTGAAGAGATTCTTGTTGAAAGAGTTGTTGGACGTAGACTGGATCCTG TTACTGGCAAGATATACCACATGACTTACTCTCCCCCTGAGACTGAAGAAATAGCTGCCAGACTAACCCAACGTTTCGATGATACTGAAGAAAAGGTGAA AGGGAATGCCCCAAAAGAAGAAGTTTTTGCTGAGATTGACGGCGCACTGACAAAATTGCTCGAGAGTAGGAAGGCAACTTGA
AA sequence Show only first row Show all	>Lus10037995 pacid=23163797 polypeptide=Lus10037995 locus=Lus10037995.g ID=Lus10037995.BGIv1.0 annot-version=v1.0 MADPPLRIMISGAPASGKGTQCELITKKYSLVHIAAGDLLRAEIAFGSENGKQAKEYMEKGQLVPDEIVVMMVKDRLMQPDSQENGWLLDGYPRSSSQAT ALKGYGFEPDIFIVLQVPEEILVERVVGRRLDPVTGKIYHMTYSPPETEEIAARLTQRFDDTEEKVKGNAPKEEVFAEIDGALTKLLESRKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10037995 [exp]	0	1
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10017049 [exp]	5.2	0.8689
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	13.6	0.7901
					Lus10022042 [exp]	21.5	0.8083
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	22.1	0.8188
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	24.2	0.8513
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	26.0	0.8103
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	29.2	0.8022
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013614 [exp]	33.9	0.8277
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	45.5	0.8155
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10014120 [exp]	46.7	0.8179

Compare expression of checked genes

Lus10037995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.