Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39000 322 / 2e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT4G28030 45 / 2e-05 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT5G16800 43 / 0.0001 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT3G02980 43 / 0.0002 MCC1 MEIOTIC CONTROL OF CROSSOVERS1 (.1) AT2G38130 42 / 0.0002 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009229 [exp] 434 / 1e-155 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10023517 [exp] 376 / 7e-132 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10040401 [exp] 372 / 3e-130 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10019975 [exp] 48 / 4e-06 AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10041016 [exp] 43 / 0.0001 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10013457 [exp] 43 / 0.0002 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10021995 [exp] 42 / 0.0004 AT1G72030 181 / 4e-56 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10041514 [exp] 40 / 0.0008 AT2G38130 287 / 3e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10012579 [exp] 40 / 0.0009 AT2G38130 286 / 7e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039300 [exp] 364 / 2e-126 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.010G222900 [exp] 345 / 8e-120 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.005G054600 [exp] 46 / 2e-05 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G176500 [exp] 45 / 3e-05 AT4G28030 284 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.013G079900 [exp] 44 / 6e-05 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.019G050700 [exp] 42 / 0.0002 AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.011G139300 [exp] 41 / 0.0005 AT2G38130 294 / 1e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G429200 [exp] 40 / 0.0008 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G435300 [exp] 40 / 0.001 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G432400 [exp] 40 / 0.001 AT2G38130 296 / 4e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10037996 pacid=23163858 polypeptide=Lus10037996 locus=Lus10037996.g ID=Lus10037996.BGIv1.0 annot-version=v1.0 ATGTTTGCTGGAATGCTGGAGAAGGTAAAGAGAACAATATCGGGTGAGGAAATGCTATCGTTGCCTTTGGGAATATGGTTTCCTCCTCCCACCTCTTCGT CCTTACCCAACAGCAACACTTGTCTCCACTGCTATCCCACTCCCCCTCTTAACCCTTATCATCACCGCCACTTCTCTTCTTCTTCTTCTTGTTCTTCTTC CAGGATTCTTCATGACCGTTCTTCACTTCCCCTCCACTCACTTCCCAGTTCAGGAATGTGCAGAGCTAGTCAAATGGCGGAGTTGTTCCCAACATTGGCT CCAGAGATAGTGGTGAGGGAGGCTAGGATGGATGACTTTTGGGAAGTGGCCGAGACTCATTGCAGCTCTTTCTTCCCGAGATACTCATTCCCGCTGGATT TCGCTCTGAGACTGAATAGGCTAGTGGGGATGCTAGTTGGCTACTCTGTACCATCTGGTTGCAAGAGAATTTTTCTGGTTGCTATTGTCGTTGATCAATC TTTTTACATTGGTAACGAGGGTATCAAGATTGGAGGATTTGATGCCAAGTTTACCGTGAACAAGGGATATGTTGCTGGGATACTGACCCTTGATACAGTA GCTAATTTCCTCCCGAGAAAAGGTCCAGAAAAGAAAAGAAGGACTGGGATCGCATACATATCAAATGTAGCTGTGCGTGAAAGATTTCGACGCAAGGGGA TAGCTAAACAACTTGTTGTAAAGGCAGAGACATTGGCGAAAACTTGGGGCTGCCGCGCCATTGCTCTTCATTGCGAACTGCAGAATCCAGGTGCCACCAG ACTGTACAGAGGTCAAGGTTTCAAGTGCATCACAGTGCCCGAGGGTGCAAACTGGCCTCATCCCAGAATCTCTCCAGATGTTAAATTTAACTTCATGATG AAGCTTCTAAAACCCACAGCATCAACCATTATCACTTAG
AA sequence Show only first row Show all	>Lus10037996 pacid=23163858 polypeptide=Lus10037996 locus=Lus10037996.g ID=Lus10037996.BGIv1.0 annot-version=v1.0 MFAGMLEKVKRTISGEEMLSLPLGIWFPPPTSSSLPNSNTCLHCYPTPPLNPYHHRHFSSSSSCSSSRILHDRSSLPLHSLPSSGMCRASQMAELFPTLA PEIVVREARMDDFWEVAETHCSSFFPRYSFPLDFALRLNRLVGMLVGYSVPSGCKRIFLVAIVVDQSFYIGNEGIKIGGFDAKFTVNKGYVAGILTLDTV ANFLPRKGPEKKRRTGIAYISNVAVRERFRRKGIAKQLVVKAETLAKTWGCRAIALHCELQNPGATRLYRGQGFKCITVPEGANWPHPRISPDVKFNFMM KLLKPTASTIIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10037996 [exp]	0	1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	3.7	0.8892
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	5.1	0.8485
AT1G54520			unknown protein		Lus10015939 [exp]	7.8	0.8931
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	14.5	0.8345
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	16.2	0.8596
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	18.9	0.8698
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	19.9	0.8447
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10023149 [exp]	24.0	0.8664
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	26.7	0.8413
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10015874 [exp]	28.0	0.8569

Compare expression of checked genes

Lus10037996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.