Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20660 1132 / 0 Zn-dependent exopeptidases superfamily protein (.1.2) AT1G67420 179 / 2e-46 Zn-dependent exopeptidases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009230 [exp] 1714 / 0 AT5G20660 1154 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037015 [exp] 185 / 9e-48 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10015792 [exp] 126 / 2e-29 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039400 [exp] 1308 / 0 AT5G20660 1083 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.008G175400 [exp] 187 / 9e-49 AT1G67420 1062 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.010G060500 [exp] 179 / 4e-46 AT1G67420 1085 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28
Representative CDS sequence Show only first row Show all	>Lus10037997 pacid=23163816 polypeptide=Lus10037997 locus=Lus10037997.g ID=Lus10037997.BGIv1.0 annot-version=v1.0 ATGCGTAAGCGTGCGGGAAATTCATCGGCGAGATCCAAGTCGTCGGATGGCAAGCCACTGACCACAGGCGGTGGTGATGGTGCCGCTGCCGATGACTGCG TACAAAGTAGCAACGGCGACGGCTCTAGCACGCTGTTTACTGCTCGGAGGTCCGGCTCAGTGTGGTTGATCATGTTCGTTGCATTAATCTACTCGTCTTG GTGGGTTTACAGTTACCAGTACGATAGTTTGCCTCTGCCTCTGACTGCTGAGCAAGCCGGGAAAAGAGGCTTCTCCGAGGTGGAAGCGATGAAGCACGTC GAGTCGTTGACTCAATTTGGACCTCATCCCATTGGCTCCGATGCGCTTGATCGTGCTCTCCAGTATGTTATGGCAACTGCAGAAGCAATTAAGAAAACTG CTCACTGGGAAGTTGACATTGAAGTGGACCTTTTCCATGCAAAATCTGGTGCAAACCGCTTGGTCAGTGGCCTCTTTGTAGGGAAGACACTTGTGTATTC TGACCTTACACACGTTGTATTACGAATTTCGCCAAAATATTCTTCTGAATCTGAAGATAATGCTATTCTCGTCTCCTCTCACATTGATACCGTATTCTCA ACAGAAGGTGCTGGAGATTGCAGTTCATGTGTAGCTGTGATGTTGGAGCTTGCCAGGGGGATTTCTCAAAGGGCTCATGGATTCAAGAATTCTGTAATAT TCTTATTTAACACAGGTGAGGAAGAAGGTCTGAGTGGCGCACACAGCTTTATAACACAGCACCCATGGAGTACTACTATAAAGATGGCTATTGATTTGGA GGCCATGGGTATTGGAGGAAAGTCTAGCATTTTCCAGGCTGGGCCTAATCCCTGGGCAATTGAAAATTTTGCATTAGCAGCTAAATACCCTTCTGCCAAC ATTATAGCACAGGATCTTTTTGCTTCCGGAATAATTAAATCTGCTACTGATTTCCAAGTATACAAGGAGGTTGCTGGTCTATCAGGGCTTGACTTTGCCT ACACTGATAATAGTGCTGTCTATCATACTAAGAATGACAAATTAGAGCTATTGAAGCGCGGATCTCTTCAGCATCTTGGAGAAAACATGCTGGCTTTTCT GGTCCAGGTTGCTTCATCTTCTGATATTGCAAAGGCTAAAACAACTACTGAAGATGAGAACATTAGCACTGAGAGTGCTGTATTCTTTGACATTTTGGGG TCCTATATGGTAGTGTATAATCAACGGTTTGCAAGCATGATTCAAAATTCAGTGATGATGCAGTCACTTCTAATTTGGACAACTTCCTTACTAATGGGTG GTTATCCAGCTGTGATTTCATTTGGATTATCATGTCTGAGTGCTGTGCTTATGTGGATTTTCTCGATAGGGTTTTCATTTGCAGTGGCCTTCATTCTACC CCAAATAGCTTCCTCGCCTGTGCCATATGTTGCTAATCCATGGTTGGTAATTGGCTTATTCGCTGCTCCTTCTCTACTTGGGGCAGCGACTGGCCAACAT TTAGGTTATCTAATCCTAAGAGCATATTTATCAAATGTCCACTCCAAGAGGAAGCAACAATCACCTGCCATCCAAGCTGAACGAGTCAAGTTAGAGTCTG AGAGATGGGTGTTTAAAGCTGGTTTCATCCAATGGCTTGTATTACTGGCTATCGGAAACTACTTCAAAGTTGGATCATCCTATATAGCCCTTTTCTGGCT AGTTCCTCCAGCATTTTCATATGGCCTGCTTGAGGCGACTTTGACTCCAGCTCGGACACCAAGGCCACTCAAACTTGCAACACTGCTGATAGGGTTGGCT GTACCAGTTTTGATTTCTACGGGAGTTTTCATTCGCTTTGCTGGTACAGTAATTGGCCTTGTCGTCCGATTTGATAGGAGCCCAGGCAGCACTCCTGAGT GGTTGGCAAGCGCGATAGTCTCTGCTTACATTGCCATTGTCACGTGCCTGACCTTGGTCTACATCCTTTCATATGTTCATATTGCAGGGGTTGCTAAAAG GTCAATTTTCCTATTAATTACTTTGATCTTTGGTGTTTCACTTGGTCTTGTATTATCTGGTGTAACACCACCCTTCACCAAGGACACTGCTCGAGCCGTT AATGTGGTACATGTCGTGGACACAATGTCAAAAGAGGGGGGGAAGCAAGATCCTGTTTCGTATGTTTCTCTATTTTCCATAACTCCTGGAAAGCTGGCGA AAGAAGTTGAAGAAATTGACGAGGGATTTGTATGCGGAAGAGACAAGGTTGTTGATTTCATCACGTTCTCAGTGAAATACGGTTGCGTGGCACATAATGA TGATGAAAGCAGACGTGGGTGGAGTGATTCTGATGTTTCAGAACTGCATGTCGATAGTGATACCAAGGGGAAAGAAGGAAGAATTACGCAAGTCTCGTTC GATGCAAAAGCTTCGACGCGGTGGTCGCTCGCGATAAATAGTGAAGAAATAGAAGATTTCATTCTTAAAGGTAACTCTGAGGAATTAGTACCATTGGGAG ACAAGAGCAGCGCAGATGGATGGCATATCATTCAATTTGCAGGTGGGAGGGAGTCACCAAGACAGTTGGAACTCACTCTCTTCTGGCAAAAGAAATCGAA GCAACCGTCTCAGAAATCGATAGAGAAGGGGGGAGAGGCACGGCCTTTACTTAAGTTGAGAACAGATGTTCAGAGAGTAACTCCAATAGCAGAAAGAGTT CTTTCTAAGCTCCCCAAGTGGTGTTCGCAATTTGGGAAGTCCTCTTCTCCATACAATCTAGCTTTCTTGACAAGTCTCCCCGTCAACTTTTAG
AA sequence Show only first row Show all	>Lus10037997 pacid=23163816 polypeptide=Lus10037997 locus=Lus10037997.g ID=Lus10037997.BGIv1.0 annot-version=v1.0 MRKRAGNSSARSKSSDGKPLTTGGGDGAAADDCVQSSNGDGSSTLFTARRSGSVWLIMFVALIYSSWWVYSYQYDSLPLPLTAEQAGKRGFSEVEAMKHV ESLTQFGPHPIGSDALDRALQYVMATAEAIKKTAHWEVDIEVDLFHAKSGANRLVSGLFVGKTLVYSDLTHVVLRISPKYSSESEDNAILVSSHIDTVFS TEGAGDCSSCVAVMLELARGISQRAHGFKNSVIFLFNTGEEEGLSGAHSFITQHPWSTTIKMAIDLEAMGIGGKSSIFQAGPNPWAIENFALAAKYPSAN IIAQDLFASGIIKSATDFQVYKEVAGLSGLDFAYTDNSAVYHTKNDKLELLKRGSLQHLGENMLAFLVQVASSSDIAKAKTTTEDENISTESAVFFDILG SYMVVYNQRFASMIQNSVMMQSLLIWTTSLLMGGYPAVISFGLSCLSAVLMWIFSIGFSFAVAFILPQIASSPVPYVANPWLVIGLFAAPSLLGAATGQH LGYLILRAYLSNVHSKRKQQSPAIQAERVKLESERWVFKAGFIQWLVLLAIGNYFKVGSSYIALFWLVPPAFSYGLLEATLTPARTPRPLKLATLLIGLA VPVLISTGVFIRFAGTVIGLVVRFDRSPGSTPEWLASAIVSAYIAIVTCLTLVYILSYVHIAGVAKRSIFLLITLIFGVSLGLVLSGVTPPFTKDTARAV NVVHVVDTMSKEGGKQDPVSYVSLFSITPGKLAKEVEEIDEGFVCGRDKVVDFITFSVKYGCVAHNDDESRRGWSDSDVSELHVDSDTKGKEGRITQVSF DAKASTRWSLAINSEEIEDFILKGNSEELVPLGDKSSADGWHIIQFAGGRESPRQLELTLFWQKKSKQPSQKSIEKGGEARPLLKLRTDVQRVTPIAERV LSKLPKWCSQFGKSSSPYNLAFLTSLPVNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20660			Zn-dependent exopeptidases sup...		Lus10037997 [exp]	0	1
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	3.5	0.9669
AT1G09195			unknown protein		Lus10031400 [exp]	7.7	0.9368
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	8.9	0.9503
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10009441 [exp]	8.9	0.9473
AT5G41810			unknown protein		Lus10003901 [exp]	12.2	0.9573
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	15.0	0.9555
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	15.7	0.9367
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	15.9	0.9375
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	16.6	0.9528
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	17.5	0.9487

Compare expression of checked genes

Lus10037997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.