Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45510 535 / 0 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 516 / 4e-179 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT1G69500 417 / 4e-140 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT3G56630 353 / 2e-115 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 340 / 4e-110 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT5G23190 321 / 4e-102 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 315 / 5e-101 Cytochrome P450 superfamily protein (.1) AT2G45970 316 / 2e-100 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT2G27690 306 / 3e-97 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT1G63710 305 / 2e-96 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009232 [exp] 816 / 0 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10038896 [exp] 560 / 0 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10015018 [exp] 558 / 0 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037157 [exp] 424 / 1e-142 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 419 / 2e-140 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 333 / 3e-107 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 329 / 2e-105 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 326 / 6e-104 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10014741 [exp] 322 / 4e-103 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072100 [exp] 820 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072300 [exp] 776 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072000 [exp] 548 / 0 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.012G131200 [exp] 510 / 3e-176 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.008G088900 [exp] 425 / 8e-143 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 356 / 2e-116 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 348 / 1e-113 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.007G072100 [exp] 323 / 4e-103 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.014G085800 [exp] 323 / 7e-103 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.005G092200 [exp] 323 / 1e-102 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10037999 pacid=23163640 polypeptide=Lus10037999 locus=Lus10037999.g ID=Lus10037999.BGIv1.0 annot-version=v1.0 ATGTCGAGATTTCTAGTGGAGACCCAGAAAGATCTGGAGAAGATGAACGATCGATACTTGAGAGACATAATCCTTAACTTCACGATTGCTGGGAAAGACA CTAGCGCCAGAACTCTGTCTTGGTTCTTCTACATGATGCCCAAACATCTTCTAATCCAAGACAAGGTAGCTCTTGAGGTGATCCAAGTGGCCAATAACGA CCATTGTGATTCCAAATCGTCTGTGCATAATTTCATCGAAAGTATCAACGACGCAACACTCGACAAATTGCAGTACCTCCATGCAATTTATTTTCTTCCA TCAGTAATGGATCAGTTCCCATTCGGCTTCACAGCTCTAGCTGTGTTCATCTTGCTTTCTCTTCTTTCCTTGATGTTCATCAACACAAAGAAGAAGAAAT GCAAATACCACCCAATTGGGGGCACAGTGCTCCACCAGCTCATCAACTTCAACAGACTGCACCACTACATGACCGATCTCGCCGCCAAACACCCGACCTA CCGGCTGTTAGGGCTTTTCAGGGCCGAGGTTTACACCTCCGACCCTGCTAATGTCGAGTTCATCCTCAAGACCAACTTCCAAAACTACGGCAAGGGAGAC CATAATTACAACAACCTTAGTGATCTTCTGGGCGACGGTATTTTCACGGTGGATGGCGACAAATGGCGACAGCAGAGGAAGATCTCTAGCTATGAGTTCT CCACTAAGGTGTTGAGGGATTTCAGCAGTGTGGTGTTCAGGAAGAATGTTGTCAAACTTGCTGATATTATCTCTCGAGCTGCTCAATCTGGTCACTCCAT GGATATACAGGATCTGTTCATGAAATCAACTCTGGATTCCATATTCAAGGTTGCATTCGGGGTTGAACTTGACAGCATGTGTGGATCAAACGAGGAAGGT ACCAAATTCAGCAATGCTTTCGATGATGCAAGCGCCATGACTCTCTTTCGGTACGTTGACCCGTTCTGGAAGGTCAAGAAGCTGTTCAACATTGGCAGTG AAGCTGCACTGAAGAAGAACGTTAAAATCGTCGACGATTTCGTCTACAAGCTAATCAGCAACAAGATCGAGCTAATGCGAACCGCCAACGATGATTATGA TAACTCTACGAAAAAAGATGACATCTTGTCGAGGTTCCTCCAAGTTAAGGAGAGCCAGCAGGATCCGACATATTTGAGAGACATCATTCTCAACTTTGTG ATTGCTGGAAAGGACACTACTGCTGCAACTCTGTCTTGGTTTGTGTACATGATGTGCAAACATCCTGATGTTCAGGACAAAGTTAGTGAAGAGATCATGG AAGCAACTGAGGGGAAGGAGTTCAGAGGGTTTCGAGATTTCGCCGAGAGTATTAGTGAGGAAACCTTTGAGAAGATGCAGTATCTTCATGCAGCTTTAAC TGAGACTCTCAGACTGTATCCAGCTGTGCCAGTGGATGCAAAGGTTTGTCTTTGTGATGATACATTACCAGATGGTTACAGTGTGAGGAAAGGTGATATG GTGGCTTACCAGCCTTATGCAATGGGGAGGATGAAGTTCATATGGGGCGATGACTGTGAGGAATACAAACCAGAGAGATGGCTGAACCAGGATGGCAATT TCCAGCCTGAGAGTCCCTTCAAGTTCACTGCTTTCCAGGCTGGGCCGAGGATATGTCTGGGAAGGGAGTTTGCATACAGGCAGATGAAGATATTTGCTGC TGTTCTGATAGGAAGCTTCGTTTTCAAACTCAGTGATGAAACTAAAGCTGTCAATTACAGAACCATGATTAATCTTCATGTTGATGGAGGCCTTCACGTT ACTGCTGTCCACAGAAGAAGCAGTTGCTAA
AA sequence Show only first row Show all	>Lus10037999 pacid=23163640 polypeptide=Lus10037999 locus=Lus10037999.g ID=Lus10037999.BGIv1.0 annot-version=v1.0 MSRFLVETQKDLEKMNDRYLRDIILNFTIAGKDTSARTLSWFFYMMPKHLLIQDKVALEVIQVANNDHCDSKSSVHNFIESINDATLDKLQYLHAIYFLP SVMDQFPFGFTALAVFILLSLLSLMFINTKKKKCKYHPIGGTVLHQLINFNRLHHYMTDLAAKHPTYRLLGLFRAEVYTSDPANVEFILKTNFQNYGKGD HNYNNLSDLLGDGIFTVDGDKWRQQRKISSYEFSTKVLRDFSSVVFRKNVVKLADIISRAAQSGHSMDIQDLFMKSTLDSIFKVAFGVELDSMCGSNEEG TKFSNAFDDASAMTLFRYVDPFWKVKKLFNIGSEAALKKNVKIVDDFVYKLISNKIELMRTANDDYDNSTKKDDILSRFLQVKESQQDPTYLRDIILNFV IAGKDTTAATLSWFVYMMCKHPDVQDKVSEEIMEATEGKEFRGFRDFAESISEETFEKMQYLHAALTETLRLYPAVPVDAKVCLCDDTLPDGYSVRKGDM VAYQPYAMGRMKFIWGDDCEEYKPERWLNQDGNFQPESPFKFTAFQAGPRICLGREFAYRQMKIFAAVLIGSFVFKLSDETKAVNYRTMINLHVDGGLHV TAVHRRSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	0	1
AT1G67170			unknown protein		Lus10015495 [exp]	2.6	0.8688
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	3.5	0.8353
AT1G67170			unknown protein		Lus10019966 [exp]	6.9	0.8575
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	8.9	0.8566
AT5G55000		FIP2	potassium channel tetramerisat...		Lus10002622 [exp]	13.0	0.8059
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	13.9	0.8623
AT3G07510			unknown protein		Lus10038243 [exp]	14.1	0.8251
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	16.1	0.8395
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10027128 [exp]	16.5	0.8321
AT3G19980		STPP, ATFYPP3, ...	SERINE/THREONINE PROTEIN PHOSP...		Lus10013456 [exp]	18.1	0.8033

Compare expression of checked genes

Lus10037999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.