Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37740 79 / 4e-17 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G52910 75 / 5e-16 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G36400 75 / 6e-16 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G45480 75 / 7e-16 GRF ATGRF9 growth-regulating factor 9 (.1) AT2G22840 74 / 1e-15 GRF ATGRF1 growth-regulating factor 1 (.1) AT5G53660 74 / 1e-15 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 73 / 3e-15 GRF ATGRF8 growth-regulating factor 8 (.1) AT3G13960 66 / 6e-13 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 61 / 3e-11 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G21430 44 / 4e-05 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009234 [exp] 332 / 8e-118 AT2G45480 79 / 4e-17 growth-regulating factor 9 (.1) Lus10011559 [exp] 76 / 6e-16 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10008268 [exp] 75 / 9e-16 AT4G24150 156 / 3e-42 growth-regulating factor 8 (.1) Lus10009533 [exp] 75 / 1e-15 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10019275 [exp] 74 / 1e-15 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1) Lus10014380 [exp] 73 / 1e-15 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10033441 [exp] 74 / 2e-15 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10033236 [exp] 74 / 2e-15 AT4G24150 151 / 1e-40 growth-regulating factor 8 (.1) Lus10020352 [exp] 71 / 1e-14 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071800 [exp] 82 / 1e-18 AT2G45480 164 / 8e-46 growth-regulating factor 9 (.1) Potri.002G115100 [exp] 77 / 1e-16 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 77 / 1e-16 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.006G115200 [exp] 76 / 3e-16 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1) Potri.014G007200 [exp] 76 / 5e-16 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1) Potri.007G007100 [exp] 75 / 1e-15 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.013G077500 [exp] 73 / 2e-15 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.001G082700 [exp] 73 / 4e-15 AT4G24150 156 / 1e-41 growth-regulating factor 8 (.1) Potri.012G022600 [exp] 72 / 6e-15 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.001G114000 [exp] 69 / 9e-15 AT4G37740 119 / 2e-31 growth-regulating factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC
Representative CDS sequence Show only first row Show all	>Lus10038002 pacid=23163798 polypeptide=Lus10038002 locus=Lus10038002.g ID=Lus10038002.BGIv1.0 annot-version=v1.0 ATGGAGGTAGAGGCGCCGTGGAGGTGCAGGAGAACAGACGGCAAGAAATGGAGGTGCAAAAGGAATGTGGTCTCCGATCACAAGTACTGTGACCGCCATA TGTACCGCGGCCGTCTCCGTTCAAGAAAGCCTGTGGAACAACAACAATCTCTCTTCTTATTCCCCTCTAGCAACAACAACACCGACGGTGGTCGTGCTGG CGGCGTAACCGTACCCTCCGCCGCCGGAGAAACCACTGCCCTTCCAAGTCTCACTATAGCTGCAGCCGATTCAAGAGTCAACGTTACAAGCAGTAACACT CAAGGGCTGGACTTCTCTCCCAACAGTGTTCTTCTTCCAGATGAGTCACAGCGGTGCAGGAGAACGGACGGGAAGAAGTGGCGGTGCCGACGTGATGTGG TCTCTAACCAGAAATACTGCGACAAACATTTGCACAGAGGAGCAAAAAGACGTCCGGAAGATGCCGCAGCAGCTTCCACCGCCGGTCGCCCCCCCCGCCG GCGGTGGTGTTCCGCCGCCTACATCTCAACAAATGGAATGTTCTTCCAAAATGCTGACCGGAAAAGATAA
AA sequence Show only first row Show all	>Lus10038002 pacid=23163798 polypeptide=Lus10038002 locus=Lus10038002.g ID=Lus10038002.BGIv1.0 annot-version=v1.0 MEVEAPWRCRRTDGKKWRCKRNVVSDHKYCDRHMYRGRLRSRKPVEQQQSLFLFPSSNNNTDGGRAGGVTVPSAAGETTALPSLTIAAADSRVNVTSSNT QGLDFSPNSVLLPDESQRCRRTDGKKWRCRRDVVSNQKYCDKHLHRGAKRRPEDAAAASTAGRPPRRRWCSAAYISTNGMFFQNADRKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	0	1
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	1.0	0.9942
AT4G01290			unknown protein		Lus10039283 [exp]	1.4	0.9882
					Lus10007549 [exp]	4.9	0.9843
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	4.9	0.9804
AT1G44760			Adenine nucleotide alpha hydro...		Lus10042701 [exp]	5.7	0.9785
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	6.0	0.9830
					Lus10015654 [exp]	7.1	0.9818
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	7.5	0.9796
AT5G67460			O-Glycosyl hydrolases family 1...		Lus10002466 [exp]	8.4	0.9803
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	8.8	0.9737

Compare expression of checked genes

Lus10038002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.