Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024541 [exp] 117 / 7e-33 ND / Lus10026451 [exp] 106 / 6e-30 ND / Lus10008255 [exp] 106 / 8e-27 AT1G48120 49 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10002999 [exp] 64 / 7e-13 ND / Lus10000455 [exp] 52 / 3e-08 ND / Lus10018141 [exp] 40 / 0.0004 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038003 pacid=23163729 polypeptide=Lus10038003 locus=Lus10038003.g ID=Lus10038003.BGIv1.0 annot-version=v1.0 ATGGAGTGGCGCCAATCCCGAGGAGGCAGCTTCATCAACGGTTGTGATGAAATCCACCTCACGGGTCTAGGTCATGAAGCTTGGAATCCAAGGAATCAAG GACTCGGAGAGAAGATAGGCGAGGAACTTAAAGGGTTTGGAGAAGCTTGGGGCATAAGTAATGCATTTGGGAACGGAATTGGACTAGATGAAGTCAAAGG CACGTTTGAGTTGATCAATCATGATAATTTCAACCTTGAGGAACAGACCATTCAACAAAGAACCCTGAAATCAGCCCAAGGCATTGATGCCGGCATCGAC ATCAACATCTGCACCGTGGCCACACCTAAAAATCAAGATCCGCAAGAACGAGCGTTCGGGACAACTTTTATCGCACTATCTTTGAAGAAAAGGTGTGGAA AGATGATAAAAGACATGTCCCTGAATTTGGAACCATTCAGAGCACAATCGAGTCCAAAGGTGCGAAATTACTTGAAATCGGGTCGACAGATTTTGGAGGA TTGCACCAAATCGCACCTTGAACCAAACAAGAAAACTTTGCCCGCACCATCTTTGGATCAGGAGTTTAATGAGTCATATGAAGACACCATATAG
AA sequence Show only first row Show all	>Lus10038003 pacid=23163729 polypeptide=Lus10038003 locus=Lus10038003.g ID=Lus10038003.BGIv1.0 annot-version=v1.0 MEWRQSRGGSFINGCDEIHLTGLGHEAWNPRNQGLGEKIGEELKGFGEAWGISNAFGNGIGLDEVKGTFELINHDNFNLEEQTIQQRTLKSAQGIDAGID INICTVATPKNQDPQERAFGTTFIALSLKKRCGKMIKDMSLNLEPFRAQSSPKVRNYLKSGRQILEDCTKSHLEPNKKTLPAPSLDQEFNESYEDTI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038003 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006697 [exp]	2.4	0.8695
AT5G36930			Disease resistance protein (TI...		Lus10005827 [exp]	6.2	0.7775
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	6.8	0.8489
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	8.0	0.8196
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	8.5	0.8485
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	9.8	0.8485
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	11.0	0.8485
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	11.5	0.8425
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	12.0	0.8433
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	15.2	0.7950

Compare expression of checked genes

Lus10038003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.