Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45470 293 / 1e-98 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 262 / 1e-86 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT4G12730 181 / 2e-55 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 155 / 2e-45 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT3G12660 124 / 6e-35 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 122 / 5e-34 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT4G31370 100 / 2e-25 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT3G46550 60 / 1e-10 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009235 [exp] 394 / 1e-138 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10012344 [exp] 173 / 4e-52 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 169 / 2e-50 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001178 [exp] 168 / 4e-50 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 169 / 5e-50 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10022517 [exp] 167 / 1e-49 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001752 [exp] 110 / 7e-29 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10026957 [exp] 102 / 2e-26 AT2G24450 127 / 2e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10020158 [exp] 100 / 2e-25 AT2G24450 127 / 4e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071700 [exp] 296 / 6e-100 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G168100 [exp] 171 / 2e-51 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 167 / 8e-50 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 164 / 6e-49 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G037800 [exp] 142 / 6e-41 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 134 / 1e-38 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 130 / 5e-37 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G174900 [exp] 70 / 8e-14 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G097000 [exp] 64 / 1e-11 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10038004 pacid=23163643 polypeptide=Lus10038004 locus=Lus10038004.g ID=Lus10038004.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCCGGCTACTTCCTCCTCTTCCTCGCTCTCTCCATTTCCGCCGTCTCCGCTCACAACATCACCGAGATCCTCTCCGACTCCCCCGACTACT CCCAGTTCAACGACTACCTTACCCGAACCGGATTGGCCGACGAAATCAACAGCCGCCAGACCATTACCGTCCTAGCTCTCAACAATGGCGCAATGTCGGA TCTATCCAAACACCCCGTCTCCGTCGTCAAGAAGGCTCTCAGCCTCCTCGTCGTCCTCGATTACTTCGACCCTGCCAAGCTCCACAAGATCACCGACGGC TCCCTCCTCTCAACAACTCTCTACCAGACCACGGGTAATGCCCCAGGAAACTTCGGATTCGTCAACATCACCGATTTGCAAGGCGGTAAGGTCGGGTTCG GGTCGGCCGCTCCCGGGTCGAAACTCGACTCCTCCTACGTCAAACCGGTCAAACAGATCCCGTACAACATATCGGTCGTCGAGATCACCGCTCCTATTAT TGCTCCTGGGATGTTGACGGCGCCGGCGCCGTCTGCATCCGACGTTAATATCACGGCGTTGCTGGAGAAAGCCGGGTGCAAGACGTTCGCCGGCTTGTTG CAGAGCAGTGGAGTCCTGAAGAGTTTTATGACGGCCGCCCAGTAA
AA sequence Show only first row Show all	>Lus10038004 pacid=23163643 polypeptide=Lus10038004 locus=Lus10038004.g ID=Lus10038004.BGIv1.0 annot-version=v1.0 MAASGYFLLFLALSISAVSAHNITEILSDSPDYSQFNDYLTRTGLADEINSRQTITVLALNNGAMSDLSKHPVSVVKKALSLLVVLDYFDPAKLHKITDG SLLSTTLYQTTGNAPGNFGFVNITDLQGGKVGFGSAAPGSKLDSSYVKPVKQIPYNISVVEITAPIIAPGMLTAPAPSASDVNITALLEKAGCKTFAGLL QSSGVLKSFMTAAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	0	1
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	1.0	0.9519
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	1.4	0.9443
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010924 [exp]	4.6	0.9438
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021832 [exp]	4.9	0.9110
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	5.3	0.9015
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	6.7	0.9156
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	7.7	0.9155
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	7.7	0.9053
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	9.4	0.9239
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10025912 [exp]	10.0	0.8890

Compare expression of checked genes

Lus10038004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.