Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009235 [exp] 0 / 1 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038005 pacid=23163880 polypeptide=Lus10038005 locus=Lus10038005.g ID=Lus10038005.BGIv1.0 annot-version=v1.0 ATGATTTTTTCAGTCGACAACGTGCTTCTCCCAGAGGAGCTTTTCGGGAAATCTCCGTCGCCGGCGCCTGCTCCCGGACCTGCAATGACTCCTTCTCCTA GCCCAGCTCCGTCCAGCGTGGAAGCGCCGTCGCCGTTGGCTGCTTCGCCACCTGCTCCGCCTGCAGAAACCCCCGGAGGCTCTCCCGCCGACTCCCCTGA CGGTGGGTCAGAGAGTAGTACGGCGGATAATGCGGCTGTTCACGTGAGTAGTGGCTCAGGGTGTTTCTCGTGTATGGTGGCTTGGGTTTTTTGGCGGCAG TCTCGGCAGTGGCTGCCACTGGCTTTTGCTCGGTTCTGTTCTGATGATGGCATGGATCGTAAATTATTGTAG
AA sequence Show only first row Show all	>Lus10038005 pacid=23163880 polypeptide=Lus10038005 locus=Lus10038005.g ID=Lus10038005.BGIv1.0 annot-version=v1.0 MIFSVDNVLLPEELFGKSPSPAPAPGPAMTPSPSPAPSSVEAPSPLAASPPAPPAETPGGSPADSPDGGSESSTADNAAVHVSSGSGCFSCMVAWVFWRQ SRQWLPLAFARFCSDDGMDRKLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	0	1
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	1.4	0.9443
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	2.4	0.9098
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	3.5	0.8981
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	4.9	0.8878
AT1G73240			unknown protein		Lus10042457 [exp]	7.7	0.8906
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	8.7	0.8937
AT5G07900			Mitochondrial transcription te...		Lus10040819 [exp]	10.2	0.8589
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	14.1	0.8755
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	15.7	0.8662
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	17.0	0.8500

Compare expression of checked genes

Lus10038005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.