Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01930 491 / 6e-167 C2H2ZnF zinc finger protein-related (.1) AT4G31420 42 / 0.001 C2H2ZnF Zinc finger protein 622 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009236 [exp] 985 / 0 AT1G01930 576 / 0.0 zinc finger protein-related (.1) Lus10020150 [exp] 45 / 0.0002 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2) Lus10026949 [exp] 45 / 0.0002 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149800 [exp] 541 / 0 AT1G01930 527 / 0.0 zinc finger protein-related (.1) Potri.006G275300 [exp] 43 / 0.0006 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2) Potri.018G006300 [exp] 43 / 0.0007 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038006 pacid=23163710 polypeptide=Lus10038006 locus=Lus10038006.g ID=Lus10038006.BGIv1.0 annot-version=v1.0 ATGGCTGCGGAGCCTTCTCTGATCGCCTCCACGACCACCGTCAAAACAGCGGTTGCTACTACTCCTACACCAGAAAAGCGGTACCGATCCATATTCGATG TCCCTAAAGGCTTCTTCGATTCCTGCTCCTTGCTCTCACCTTCTGCAACTTCGGTCTCCACTGCCGTTGACAAGTCTGAGAATGGTAACCTCGGCGAGCT TCCGGAAAAGAGGGATGATAGCGAACTCGAGAGATCCGAAGCTGCTGCGGCAGCAGTGCCTAGATGGACCTGTAACACTTGCAAGGCGGAATTCGAATCG CTTCTGGACCAACGTTCGCATTTCAAATCCGATATCCATCGAATTAATGTAAAGCTAAGTATTGCTGGGAAACACATAGTCAATGAAGACGACTTCGATG AATTCATGCCCGATACTTTACGAGACTGTGATATATCAAGTATCTCAGGATCTGAAGATGAAGATGACAGAGGATCTTTGCCGTCCTTCAATGTCTTGAA GCGATCGCTTGAAGCTGATAAACAGAAACTATATTTCCGTCTTAGGACTGGGGAGAGAATTTCACTTTGGAGATGCTTATTACTAAGCGAGACTGAAAAG GTTTCTTATGATGACGGTAAAGCAGCTTCCACAACTCCACAGTGTTTAGGACAAAGTGATGTGACAGAGAGATTGAAGTTCTTGTTGGAAGAGCCAAGAG ATAAGCAACATTTCACGATTATGTTGCTTGCAAGTGGTGGGCACTTTGCTGGATGCGTGTTTGATGGTAGTTCAGTTGTCGTCCACAAAACATTCCACAG ATATGTTGTAAGAGCCAAAGCTGGAAAAAAGCAGTCATCGAAAGATGGAACTGGCAGGGCAGCACACTCAGCAGGTGCTTCGCTTCGTCGCCATAATGAA CTTTCGTTAAAGAAGGACATCCAAGAACTATTTACTGCCTGGAAGCAATATTTTGATGCTTGCTCTTGTGTCTTCATCCATGCTCCTTCTAGCAATCATC ATCTATTCTTTGATGGGGACAAAGCTTATTTCGGCCATCAGCATTCAGTTATTCGGAACATACCAATGAGTATAAGGAGGCCAACTTTCAAAGAAGCTCG TCGCATATACAGCTTATTGACCCAAATTTCCTATGAAGATGAGAACGATTTTCCTGTGGATTCAACAGGGGACCTGGTAGCAAGTGCCGACACCATGAAC AATGTTGGTTGCGGAAACGATAAAGAAAGCTTGAAGGATAGGGCCAGTGACGAGGACACCATGAAAGCTTCCTCAAGTGTCCACACTGATATTGATCTGC TTACTTCAAGACTCAGTGAAAGTGCAAATGTAGGCACACGAACATCTTTGCATGATGCATCAGAGGCTGGAGATTGTGATAAAGTCCTTGAACTCCTTGA AGAAGGTTTGGATCCTTGTGTAAAAGATGAGAGGGGACGAACTCCGTACATGCTTGCAACTGAGAAGGAAGTGAGAAATGTTTTCCGGCGTTTTATGGCC TTAAACCTTGATAGGTGGGATTGGCATGATGCTAAAGTCCCTAGTCCTTTGACGAAGGAAATGGAAGAATCTCAAGCTGCTAAACAGGCTGAGAAGGATG CGAAAAAGAAAGCAAGAGCAAAAGAATTGAAGAAATTGCGTAAGGCCAAGGAGAAGAAGGCGCAGGCTGAGGCTTCCGCAGCGAATGCAGCAGCAGCAGC AGTGGCGCCTAATAAACAAGCAACATCATCGGTGAACAAAGGCGGGTTGAAGTTATCTAAAGAGGAGGAACACCGTAGGGCACTAGCTGAGGAGAGGGAG AAACGAGCTGCAGCAGCAGAGAGAAGAATGGCAGCTGTTGGGGGTGATTTGGCAGCGACGGGAAGCACATCACAGCCGAAAGTTGGGCTGGCAATAGCAA CAGATCCCAACAACTGCTCGTGCTGCAACGCATCGTTATCGTGCTTAGTTCCGTTCCACAGATATAACTACAAGTACTGCAGCTCGTCGTGCATGCATGT TCATAGGGAAATTCTGGAGGACGGATGA
AA sequence Show only first row Show all	>Lus10038006 pacid=23163710 polypeptide=Lus10038006 locus=Lus10038006.g ID=Lus10038006.BGIv1.0 annot-version=v1.0 MAAEPSLIASTTTVKTAVATTPTPEKRYRSIFDVPKGFFDSCSLLSPSATSVSTAVDKSENGNLGELPEKRDDSELERSEAAAAAVPRWTCNTCKAEFES LLDQRSHFKSDIHRINVKLSIAGKHIVNEDDFDEFMPDTLRDCDISSISGSEDEDDRGSLPSFNVLKRSLEADKQKLYFRLRTGERISLWRCLLLSETEK VSYDDGKAASTTPQCLGQSDVTERLKFLLEEPRDKQHFTIMLLASGGHFAGCVFDGSSVVVHKTFHRYVVRAKAGKKQSSKDGTGRAAHSAGASLRRHNE LSLKKDIQELFTAWKQYFDACSCVFIHAPSSNHHLFFDGDKAYFGHQHSVIRNIPMSIRRPTFKEARRIYSLLTQISYEDENDFPVDSTGDLVASADTMN NVGCGNDKESLKDRASDEDTMKASSSVHTDIDLLTSRLSESANVGTRTSLHDASEAGDCDKVLELLEEGLDPCVKDERGRTPYMLATEKEVRNVFRRFMA LNLDRWDWHDAKVPSPLTKEMEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQAEASAANAAAAAVAPNKQATSSVNKGGLKLSKEEEHRRALAEERE KRAAAAERRMAAVGGDLAATGSTSQPKVGLAIATDPNNCSCCNASLSCLVPFHRYNYKYCSSSCMHVHREILEDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10038006 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	6.4	0.8034
AT2G05710		ACO3	aconitase 3 (.1)		Lus10015116 [exp]	8.4	0.7748
AT3G19780			unknown protein		Lus10040970 [exp]	10.6	0.7852
AT3G19780			unknown protein		Lus10013425 [exp]	11.8	0.7491
AT3G15160			unknown protein		Lus10040027 [exp]	14.7	0.7929
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	17.6	0.7979
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	18.0	0.7233
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	18.8	0.7913
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	23.7	0.7927
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10014927 [exp]	28.8	0.7755

Compare expression of checked genes

Lus10038006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.