Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01950 1199 / 0 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT1G12430 1079 / 0 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT3G54870 534 / 9e-176 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT3G63480 217 / 9e-62 ATP binding microtubule motor family protein (.1.2) AT2G37420 203 / 8e-54 ATP binding microtubule motor family protein (.1) AT3G44730 201 / 6e-53 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G59540 197 / 2e-52 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19050 199 / 6e-52 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 199 / 7e-52 POK1 phragmoplast orienting kinesin 1 (.1) AT1G72250 196 / 3e-51 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009241 [exp] 1536 / 0 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10007014 [exp] 1095 / 0 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10006670 [exp] 960 / 0 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10038696 [exp] 524 / 1e-170 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 520 / 5e-168 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10024429 [exp] 211 / 8e-56 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 210 / 8e-56 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 207 / 7e-55 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 206 / 1e-54 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149400 [exp] 1277 / 0 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.014G070900 [exp] 1272 / 0 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.003G117000 [exp] 1146 / 0 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 1134 / 0 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.010G227000 [exp] 554 / 0 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.008G035400 [exp] 291 / 6e-92 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 223 / 1e-63 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G082900 [exp] 208 / 2e-55 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G026000 [exp] 202 / 3e-53 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G013300 [exp] 200 / 3e-53 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10038007 pacid=23163852 polypeptide=Lus10038007 locus=Lus10038007.g ID=Lus10038007.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGAGCTCACAGAAATGGCGTTCCTAGAGGTGGAGGAGGAGGAGGCAGGTCTTTCACTGGCGCCAATTCAAGATCATCCTCCTACAAATCAA GGCCTTCTCAGCCTTCCGGATCGGCTCTCCGCCGCAACAGTACCGGTTCCTTCGCCGCCGCTGGAGATGACGGAGTTCCTGGTAGAGTTCGTGTAGCAGT GAGATTGCGGCCCAGAAATGCGGAGGAGATGGTAGCAGATGCAGACTTTGCTGATTGTGTGGAACTGCAGGCAGAGTCGAAAAGGTTGAAACTGAGGAAG AACAACTGGGATTCAGACACTTATGAGTTCGATGAGATCCTTACCGAATTCGCATCACAGAAGCGCGTCTATGAAGTTGTTGCAAAGCCTGTCGTGGAGA GTGTGCTAGATGGTTACAATGGGACTGTCATGGCCTACGGGCAGACTGGCACTGGTAAAACTTTCACTGTTGGACACCTTGGAGACGATGATACAGCCTC TCGTGGAATTATGGTTCGTGCAATGGAGGATATTCTGGCAGACATTGCTCCAGAGACTGATTCTGTTGCAGTTTCATATCTGCAGCTTTATATGGAGACA ATCCAGGACCTCCTCGATCCTGCAAATGATAATATTTCCATTGTAGAAGATCATAAAACTGGTGATGTTTCTCTTCCTGGAGCAACTCTTCTTGAAATCA GAGACCATCAGAGTTTTTTGGAGCTTCTAAGCATAGGAGAATCTCAGAGAATAGCTGCCAACACAAAGTTGAATACGGAGTCGTCTCGTAGCCATGCCAT TCTGATGGTACATGTTAAGAGGTCAGTTGCAAGCCAGGAGGATACTATTTCAATTGAAAATGATAACTCTTCTCATTTGGTAAAACCAATAAGGCCTCTC ATTCGGAGGAGCAAATTGGTTCTAGTTGATCTGGCAGGTTCGGAGCGAATTCATAAGTCAGGAAGCGAGGGTCATATGTTAGAGGAAGCTAAATCCATCA ATCTCTCATTGAGTGCACTAGGGAAGTGCATAAATGCTCTAGCTGAAAATAGCTCACACGTACCAGTTCGTGATTCAAAACTTACAAGGTTGCTGAAGGA TTCATTTGGAGGCACAGCTAGGACTTCATTAATTGTTACAATTGGCCCATCACCACGCCATCGGGGAGAGACTGCAAGTACAATACAATTTGGCCAAAGG GCTATGAAGGTTGAGAATATGTTGAAAATAAAGGAAGAGTTTGATTATAAAAGTCTGTCCAGAAAGCTCGAGGTACAAGTGGACAAGCTTATTGCAGAGA ATGAAAGGCAGCTGAAAGCTTACGATGATGAACTTGAAAGAATAAATCAAGAAGCTCAAAATCGTATTGCTGAGGTCGAGAGGAACTTTGCTGAAGCGTT AGAGAAGGAAAGGCTAAAGTGCCAGATGGAATATATGGAATCCGTGAAGACATTGGAGGAAAAAATGTTGGCTAATCAACGAAAGCATGGCAGTGATGAC ATCGTTAATAATAAATACAATTTGGAGGATCGAGGCTTGTCCACTTCTGATGAGGTTGCCGAGGTAAGAAAATTGCTTCAGAATGAAATTCGACAAAGAA AGACAGCTGAGGAAGAGGTCACCAAGCTCAAGGCTCGGCTGGGACAAATAATGGAGTCTGAGGCAGGTGGAAATGGAGAGATGTTAAGGATTCACAACAT TCTGGATGATGAAGTTCAGAAGAAGAAAAAACTGGAAGAAGAAGTTATAATCTTACAAACCCAGTTATTACAGCTGAGTTTTGAAGCTGATCAGACAAGA AGGGGTATGGACAGAGTTGGATCAGGGAATGGCTTCAATGGAGTGGATTCTCTTTCGTCTCATGCTAGGCAAGCCCCATCAGCAAATGGACAGAAAGCAC CAGCAACTGCACTTTTTGAACAAGTTGGGTTGCATCAGATATTATCCTATTTGGAGTCTGAAGATGCTAATGTCCAAATTCACGCAGTAAAAGTGTTGGC TAATTTAGCAGCCGAAGAAGCTAATCAGGAAAAGATAGTTGAAGCTGGTGGCCTCACGTCCTTGCTGATGCTTCTTCGAAAATTCGAGGATGAAACTGTT CGCAGAGTAGCTGCCGGAGCCATTGCCAACCTTGCTATGAACGGCGAGTCCTCTCAAGTTAATCAAGAACTCATTATGACGGAAGGAGGTATAAGTTTGC TGGCCATGACGGCAGCTGATGCGGAGGATCCTCAAACTCTTCGTATGGTTGCTGGTGCTATTGCGAATCTCTGCGGGAACGATAAGTTGCAAACGAGGCT GAGGTCTGAAGGTGGAATAAAGGCACTGTTAGGAATGGTGAGATGTGGACATGCAGACGTTCTTTCCCAAGTCGCTCGAGGCATAGCTAACTTTGCGAAA TGCGAGTCTCGTGCAGCTACTCAAGGAACAAAAAGTGGAAGATCGCTTCTGATAGAAGATGGCACGCTTCCATGGATTGTACAGAACGCCAACAACGAAG CTGCTCCGATCAGACGCCATATCGAGCTAGCGTTATGCCACCTGGCTCAGCACGGACATGATAAGTGGGGGAGCATTATGGGAGCTAGTCCGGATCTCCC ACGACTGTTCCAGGGAAGATATAAGGACTCTTGCTCGTCGGACACTGAACTCGAGTCCCACGTTTCGATCGGAGATGCGGCGGCTGAGGATAGATTGAGC AAAGCACAGCAAAAGGCTAGGGGTTTTCCACAGCGTTTGATGGCTGGAACAGTTTTTTGA
AA sequence Show only first row Show all	>Lus10038007 pacid=23163852 polypeptide=Lus10038007 locus=Lus10038007.g ID=Lus10038007.BGIv1.0 annot-version=v1.0 MASGAHRNGVPRGGGGGGRSFTGANSRSSSYKSRPSQPSGSALRRNSTGSFAAAGDDGVPGRVRVAVRLRPRNAEEMVADADFADCVELQAESKRLKLRK NNWDSDTYEFDEILTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTVGHLGDDDTASRGIMVRAMEDILADIAPETDSVAVSYLQLYMET IQDLLDPANDNISIVEDHKTGDVSLPGATLLEIRDHQSFLELLSIGESQRIAANTKLNTESSRSHAILMVHVKRSVASQEDTISIENDNSSHLVKPIRPL IRRSKLVLVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSSHVPVRDSKLTRLLKDSFGGTARTSLIVTIGPSPRHRGETASTIQFGQR AMKVENMLKIKEEFDYKSLSRKLEVQVDKLIAENERQLKAYDDELERINQEAQNRIAEVERNFAEALEKERLKCQMEYMESVKTLEEKMLANQRKHGSDD IVNNKYNLEDRGLSTSDEVAEVRKLLQNEIRQRKTAEEEVTKLKARLGQIMESEAGGNGEMLRIHNILDDEVQKKKKLEEEVIILQTQLLQLSFEADQTR RGMDRVGSGNGFNGVDSLSSHARQAPSANGQKAPATALFEQVGLHQILSYLESEDANVQIHAVKVLANLAAEEANQEKIVEAGGLTSLLMLLRKFEDETV RRVAAGAIANLAMNGESSQVNQELIMTEGGISLLAMTAADAEDPQTLRMVAGAIANLCGNDKLQTRLRSEGGIKALLGMVRCGHADVLSQVARGIANFAK CESRAATQGTKSGRSLLIEDGTLPWIVQNANNEAAPIRRHIELALCHLAQHGHDKWGSIMGASPDLPRLFQGRYKDSCSSDTELESHVSIGDAAAEDRLS KAQQKARGFPQRLMAGTVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	0	1
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	5.1	0.8765
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	6.3	0.8983
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	6.3	0.8784
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	7.1	0.8992
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	8.4	0.8825
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	8.7	0.8891
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	8.9	0.8666
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	9.9	0.8779
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	10.7	0.8907
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	11.7	0.8902

Compare expression of checked genes

Lus10038007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.