Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 1808 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1768 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1493 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 1349 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 1278 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1153 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 755 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G44030 752 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT4G18780 749 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT2G25540 748 / 0 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009248 [exp] 2033 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1475 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1445 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1442 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1429 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1351 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10002134 [exp] 1320 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10025046 [exp] 1268 / 0 AT1G02730 1540 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10000755 [exp] 1231 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082200 [exp] 1876 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1871 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1489 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.001G136200 [exp] 1483 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1479 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.004G208800 [exp] 1476 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1370 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1346 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1271 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1243 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10038008 pacid=23163900 polypeptide=Lus10038008 locus=Lus10038008.g ID=Lus10038008.BGIv1.0 annot-version=v1.0 ATGGCTTCGAAATCGTTCAAAGTGAGCAGATCAAATTTGTCAATCAGTTCAGATGCGACGGACTCACAGAAGCCTCCCCTGCCGCCGACGGTGACCTTCG GACGGAGAACATCTTCCGCCCGCTACTCCAGGGACGACCTGGACAGTGAAATTGGCAGCGTCGACTTCATGAACTACACCGTCCACATCCCTCCGACGCC GGACAACCAGCCTAGCACTGACCCTTCCATCTCCCAGAAGGTGGAGGAGCAGTACGTGTCCAGCTCCCTCTTCACCGGCGGCTTCAACAGCGTCACCCGT GCACATCTCATGGACAAGGTTACCGATTCCGAACAGTCTAGCCACCCTCAGATGGCCGGAGCCAAGGGATCCTGCTGCGCCATCCCTGGCTGCGACGCCA ACGTAATGATCGACCAGCGCGGCGACGATATACTCCCTTGCGACTGTGATTTTAAGATCTGCCGTGACTGCTACGTCGACGCCGTCAAAGCCGGAGGTGC AATCTGCCCCGGCTGCAAGGATCCTTACAAGAATACTGAACTCGACGAGGTCGCCGTGGACGACGATAATTCCAATTCCCGCCCTCTCCCGCTCCCTCCC CCGGTCGCCACCATGTCGAAGATGGAGAGACGCCTTTCCCTTATGAAATCTACCAAGTCCGGCCTTATGAGGAGCCAGACTGGCGACTTCGACCACAACA GGTGGCTCTTTGAGACCAGGGGAACTTACGGCTACGGCAACGCTATCTGGACCAACGATGGTGGCTTTGGCGGCTGCAAGGATGACTCAGCTGCTGAGCC TAAGGAATTCATGTCCAAGCCATGGAGGCCTCTCACCCGTAAACTGAAGATTCCAGCTGCCGTTATCAGCCCATACAGGCTTCTTGTGTTCATTCGAGTC ATCGCTCTTGGCTTGTTTTTGTCATGGAGGGTACAAAATCCCAACAAGGAGGCTATGTGGCTGTGGGGGATGTCAGTAGTCTGCGAGCTTTGGTTTGCGT TTTCTTGGCTTCTTGATCAACTACCAAAGCTGTGTCCAATAAACCGTGCAACTGATCTGAATGTGTTGAAGGATAAGTTCGAGACCCCCACCTTACGTAA TCCAACAGGAAAGTCCGATCTTCCGGGAGTAGATGTATTCGTCTCCACTGCGGATCCTGAGAAAGAACCGCCTCTTGTTACTGCAAACACCATTTTATCA ATCTTAGCAGCTGACTACCCTGTTGAAAAGCTTGCATGTTACGTCTCTGATGACGGTGGTGCACTTCTAACCTTTGAGGCCATGGCTGAAGCTGCAAGTT TTGCTAACATTTGGGTCCCCTTCTGCCGTAAACATGATATAGAGCCTAGGAATCCAGAGTCTTACTTTAGCCTGAAGAGAGATCCCTACAAGAACAAAGT GAAGGCAGACTTTGTCAAGGATCGCAGGCGTCTAAAGCGGGAGTATGATGAGTTCAAGGTTCGAATTAATGGTTTGCCTGATTCCATTCGACGACGATCT GATGCATATCATACAAGGGAAGAAATCAAAGCATTGAAGCTTCAGAGGCAGAACAGGGTGGTTGAAGTTGAACCTGTTGAGACTGTGAAGATTCCCAAGG CTACATGGATGGCTGATGGTACCCACTGGCCTGGTACTTGGATGAATTCTGTCCCTGATCACTCCAAAGGAGACCATGCTGGGATTATCCAGGTGATGCT GAAACCACCCAGCGACGAACCACTACACGGAAGCTCCGATGAAACCAAGACCTTGGACCTTACCGATGTCGATATACGTCTCCCACTCCTTGTCTACGTT TCCCGCGAGAAGCGTCCTGGATATGATCACAACAAAAAGGCAGGAGCAATGAACGCTCTGGTTCGCGCATCAGCAATCATGTCCAACGGTCCATTCATCC TCAACCTTGACTGCGACCACTACATCTACAACTCACTAGCTCTTCGAGAAGGCATGTGCTTCATGATGGACCGAGGTGGCGACCGTCTCTGCTACGTCCA GTTCCCCCAGAGATTCGAAGGCATCGACCCTTCTGACCGATACGCAAATCACAACACCGTCTTCTTCGACGTCAACATGCGTGCTCTCGACGGTCTAATG GGACCCGTCTATGTCGGAACCGGATGCCTCTTCAGAAGAATCGCTCTCTATGGCTTCGACCCTCCTCGAGCCAAAGAGGATAACCCAGGATGCTGTGGCA GGTGGCTCTCCTTTCCCAGCTGCTTCTCCTTCTCTAGCCGCAAGAAGAAGCATACGCCGGAAGAGAACAAGTCCTTAAGAATGGAGGATTCCGACGATGA CGTAGAGATCATGAACATGAACATGTCCTTCCTTCCCAAGAAGTTCGGCAACTCTACTTTCCTCATCGACTCAATCCCAGTAGCAGAATTCCAAGGCCGT CCACTTGCAGACCATCCCGCCGTAAAAAACGGCCGTCCACCGGGAGCTCTCACCATCCCGCGAGATCTCCTTGATGCATCAACAGTTGCAGAAGCAATCA GCGTCATATCCTGCTGGTACGAAGAGAAGACCGAGTGGGGTCAACGAATCGGATGGATCTACGGCTCCGTCACGGAAGACGTTGTAACTGGTTACAGAAT GCACAACAGAGGATGGAAATCTGTCTACTGCGTCACCAAACGTGACGCCTTCCGTGGAACTGCACCCATAAACTTAACGGACAGACTCCACCAGGTGCTT CGTTGGGCAACAGGCTCAGTCGAAATCTTCTTCTCCAGAAACAACGCCTTACTCGCCAGTCCAAGAATGAAGCTCCTTCAAAGAATAGCATACTTAAACG TCGGAATCTATCCATTCACCTCGTTCTTCCTCATCGTCTACTGCTTCCTCCCGGCGTTGTCATTATTCTCAGGACAGTTCATCGTGTCAACTCTCAACGT GACTTTCTTAGCGTACTTACTCATCATAACGGTGACACTATGCATGCTGGCGGTGCTTGAGATAAAATGGTCGGGGATTGAGTTGGAGGAATGGTGGAGG AACGAGCAGTTCTGGTTAATCGGCGGGACAAGCGCTCATCTTGCGGCGGTGTTGCAAGGTTTGCTTAAAGTGGTGGCGGGGATTGAGATATCGTTCACTC TGACGTCGAAGTCGGGAGGGGATGACGTGGACGACGAGTTTGCTGATCTGTACATAGTGAAGTGGACGAGTTTGATGATACCGCCGATAGTGTGA
AA sequence Show only first row Show all	>Lus10038008 pacid=23163900 polypeptide=Lus10038008 locus=Lus10038008.g ID=Lus10038008.BGIv1.0 annot-version=v1.0 MASKSFKVSRSNLSISSDATDSQKPPLPPTVTFGRRTSSARYSRDDLDSEIGSVDFMNYTVHIPPTPDNQPSTDPSISQKVEEQYVSSSLFTGGFNSVTR AHLMDKVTDSEQSSHPQMAGAKGSCCAIPGCDANVMIDQRGDDILPCDCDFKICRDCYVDAVKAGGAICPGCKDPYKNTELDEVAVDDDNSNSRPLPLPP PVATMSKMERRLSLMKSTKSGLMRSQTGDFDHNRWLFETRGTYGYGNAIWTNDGGFGGCKDDSAAEPKEFMSKPWRPLTRKLKIPAAVISPYRLLVFIRV IALGLFLSWRVQNPNKEAMWLWGMSVVCELWFAFSWLLDQLPKLCPINRATDLNVLKDKFETPTLRNPTGKSDLPGVDVFVSTADPEKEPPLVTANTILS ILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANIWVPFCRKHDIEPRNPESYFSLKRDPYKNKVKADFVKDRRRLKREYDEFKVRINGLPDSIRRRS DAYHTREEIKALKLQRQNRVVEVEPVETVKIPKATWMADGTHWPGTWMNSVPDHSKGDHAGIIQVMLKPPSDEPLHGSSDETKTLDLTDVDIRLPLLVYV SREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLALREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLM GPVYVGTGCLFRRIALYGFDPPRAKEDNPGCCGRWLSFPSCFSFSSRKKKHTPEENKSLRMEDSDDDVEIMNMNMSFLPKKFGNSTFLIDSIPVAEFQGR PLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEEKTEWGQRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVL RWATGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVSTLNVTFLAYLLIITVTLCMLAVLEIKWSGIELEEWWR NEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	0	1
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	2.4	0.9282
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	3.5	0.9454
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029296 [exp]	5.7	0.9083
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	7.3	0.9147
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	8.9	0.9272
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	9.9	0.9274
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10000896 [exp]	12.0	0.9110
AT3G01840			Protein kinase superfamily pro...		Lus10022345 [exp]	12.6	0.9155
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	15.3	0.8991
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	15.9	0.9095

Compare expression of checked genes

Lus10038008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.