Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80620 201 / 9e-60 S15/NS1, RNA-binding protein (.1) AT1G15810 177 / 6e-51 S15/NS1, RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009249 [exp] 610 / 0 AT1G80620 273 / 6e-88 S15/NS1, RNA-binding protein (.1) Lus10010090 [exp] 254 / 3e-80 AT1G15810 265 / 7e-85 S15/NS1, RNA-binding protein (.1) Lus10007211 [exp] 233 / 2e-68 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178800 [exp] 207 / 1e-61 AT1G80620 254 / 5e-80 S15/NS1, RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [flax] [poplar] S15_NS1 PF00312 [flax] [poplar] Ribosomal_S15 Ribosomal protein S15
Representative CDS sequence Show only first row Show all	>Lus10038010 pacid=23163716 polypeptide=Lus10038010 locus=Lus10038010.g ID=Lus10038010.BGIv1.0 annot-version=v1.0 ATGGCTCTCACACTCTCTAGAGCCAATCGGCGGCCACTCGCTAGTACTTCTCTAATCCACCAAATCATATCTCCCTCTTCTCCCTCTCCACTTTCTTCTC CTTTATCCACCGTTCCTCCCGGAAATGACAACACCTCCTACTCCTCCGCTGCCGGTGCCGATTCCCAACCTGAACCAAATACGGCCGCCTCTCACGCAAA CGATGTCAAATCTAGCCTCAGAGAAGATCAGCGCTCACTGAACAGGCCCTATCCGCCTTCCGGAAACCCTATCGGCGTTCCCTCCATGGCGAAACCGATC GCCGGAGGAGGAGCACCTCTGGGTAGTCTTATGCAGAGTCTTTCCGAATTCCGGAACCGATCTCCTCCTCCTCCCTCTGGCTTCAACAAGACTGCAGCGC AACGGAACAGAGTATCGTTTGAAGACATTTACCATCGTAATGTACAGGACGCTGACGATGGCGGAAACCGCCGCCCGATTACTTTCGATACGATCAAAGA AAGCCTCAGGTCTCTGGGCACTAAAAACGCGAACAACAACGCCAAGGGAGATTCGACGCGGTCGTGGAATTTCAGTAGTACGAATGGTACGAATTCTGTT AGGTCGACGGTGAGTAGTGGGGCTATAGGAGGAGGAGGAGGAGAAGGAAGAGGGGGAATGTGGATCAATTTTGAGAAGAGCTATAGCTATGAGGAATTGG GGGCTTTGATGAAGAAACTTCGGCCGGAGGAGAAGCAGAAAGGTGGAGGGAAGAAGGGATCTTTCTCGTTACAGGAGCTGAATGAGAGGTTGAGTAAGTT AAAGGAAATGGAGGAAGAGAAAAGTTCGAAATCGACGTTTGGGCATGGGGAGTTGTTGAGGCAGGGTTTCGAAGGTCTGGCCAAGATGGATGAGCAGAAG AAGCAAGGACCAATCTACCAGCCAAGTATCTTGAGCCCGTCACCTCCTGAGTATACGTTGCATCCTCCAAAAGACAAGTTAGTTGAGAAGTATTTCCATC CAGATAACATGTCCTCTCAGGAGAAAATGAAAATTGAGCTTACTAAAGTTAGGGAAGAGTTCAAAATGAACGAGTCGGATTGCGGATCTGCTCGTGTTCA AGCATCGTCGTCTGTGTCTTGGGTTGTTGCAGTTGCACAGCTTACGACGAAGATCAAGCATCTCTCTTCAGTTCTGCACAAGAAGGACAAGCATTCGAGG AAGGGTCTTCAGGAAATGGTGCAAAGGAGAAAGAAGTTATTGAGATATCTACGAAGAACCGACTGGGACTCGTTCTGTTTCGTTCTGTCAAAACTCGGTC TTCGTGACAACCCGGACTACAAGAACTTGTGA
AA sequence Show only first row Show all	>Lus10038010 pacid=23163716 polypeptide=Lus10038010 locus=Lus10038010.g ID=Lus10038010.BGIv1.0 annot-version=v1.0 MALTLSRANRRPLASTSLIHQIISPSSPSPLSSPLSTVPPGNDNTSYSSAAGADSQPEPNTAASHANDVKSSLREDQRSLNRPYPPSGNPIGVPSMAKPI AGGGAPLGSLMQSLSEFRNRSPPPPSGFNKTAAQRNRVSFEDIYHRNVQDADDGGNRRPITFDTIKESLRSLGTKNANNNAKGDSTRSWNFSSTNGTNSV RSTVSSGAIGGGGGEGRGGMWINFEKSYSYEELGALMKKLRPEEKQKGGGKKGSFSLQELNERLSKLKEMEEEKSSKSTFGHGELLRQGFEGLAKMDEQK KQGPIYQPSILSPSPPEYTLHPPKDKLVEKYFHPDNMSSQEKMKIELTKVREEFKMNESDCGSARVQASSSVSWVVAVAQLTTKIKHLSSVLHKKDKHSR KGLQEMVQRRKKLLRYLRRTDWDSFCFVLSKLGLRDNPDYKNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	0	1
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	1.0	0.9425
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Lus10033681 [exp]	2.2	0.9288
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	4.0	0.9335
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10038863 [exp]	6.9	0.9298
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10026101 [exp]	7.7	0.9165
AT1G63980			D111/G-patch domain-containing...		Lus10024674 [exp]	9.9	0.9143
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	11.9	0.9317
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	12.7	0.9045
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	14.7	0.9260
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	18.0	0.9079

Compare expression of checked genes

Lus10038010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.