Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62010 1959 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009251 [exp] 2588 / 0 AT3G62010 1969 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G109900 [exp] 2118 / 0 AT3G62010 2006 / 0.0 unknown protein Potri.002G184400 [exp] 2110 / 0 AT3G62010 1966 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038011 pacid=23163823 polypeptide=Lus10038011 locus=Lus10038011.g ID=Lus10038011.BGIv1.0 annot-version=v1.0 ATGCTTCTTCCTTTCCTCCCTTCACTCTACATCAGAAGCCATTATTGTTGTGCTACAGCTAAAGAACTCCTCGTTCCCCGATTCAGTCCGACAAGGGAAA GGAGAAGGAAATACGACGACGACGACGACAAGTTGAGCTGTGTTCGAGACAGAAAATATCTGGCAGGTTTCTTCGGGGAGATGTCGATACCCAAGGAGCC AGAGCATGTCATGAAGCTCCGTGGTGGATCAGTCCTCGGAAAGAAGACCATTCTTAAGAGCGACCATTTCCCTGGCTGCCAGAACAAGCGCTTAACTCCT CCCATCGATGGCGCCCCAAATTACCGCCAGGCTGACACCTTACCTGTTCATGGCGTTGCAATACCAACTGTTGAGGGGATCCGTAATGTCATCAAGCACA TACGAGGTAGAAAAGATGGGAAGAGAGCTCAAGTTCTGTGGTTTAACCTTCGTGAGGAACCGTTGATGTACATTAATGGACGTCCATTTGTTCTACGCGA TGTAGAGAGGCCCTTTTCCAATCTTGAATATACGGGAATAAACAGGTTTAGGGTTGAACAAATGGAGGCTCGATTGAAGGAGGATATCTTGATGGAAGCT GCCAGATATGGCAATAAGATTCTTGTTACTGATGAATTACCAGACGGTCAGATGGTGGACCAATGGGAGCCAGTATCTAGTGATTCTGTCTATGAAGAAT TACAGGTGGAAGGTTACCACTTTGACTATGAGCGTGTTCCTATTACTGATGAAAAATCACCAGAGGAGACTGATTTTGATGTCTTAGTTGATAGAATCTA CCAAACAGATTTGACTTCAGATATAATTTTCAATTGCCAAATGGGGCGTGGTCGCACAACAACTGGGATGGTGATAGCTACTTTGGTTTACCTTAACCGA ATTGGATCTTCTGGTATCCCAAGATCCAATTCAGTTGGTAGAGTTTGTGACTTGGGTTCTGCTGTGAATGATAATGTCCTAAACTCCGAAGAGGCAATTC GTAGGGGAGAGTATGGAGTAATAAGAAGTCTAACACGAGTTCTAGAGGGTGGTGTTGAAGGGAAAAGACAAGTGGACAAAGTTATCGACAAGTGCGCCTC CATGCAGAACCTGCGGGAAGCAATTGCCACTTACCGCAATAGTATTCTTCGTCAACCTGATGAGATGAAGAGGGAGGCATCACTTTCGTTTTTTGTGGAA TACTTGGAAAGGTATTACTTCCTTATCTGCTTTGCTGTATACATCCACTCAGAGAGAGATGCCCTTCGTTCTAGTTCTTTTGGTCATAGCAGTTTTGCTG ACTGGATGAAAGCACGCCCCGAGTTGTACAGCATTATTCGCAGACTGGTCCGGCGAGATCCAATGGGTGCCCTTGGATATGCCAGTTCAAAGCCGTCATT AAGGAAGATTGCTGAATCTGCTGATGGTCGTCCTTATGAGATGGGGGTTGTTGCTGCATCGAGGAATGGGGAGGTGCTAGGTAGTCAGACTGTTTTAAAA AGTGACCACTGTCCAGGTTGCCAAAATACACATTTACCAGAGAGGGTGGAGGGTGCACCAAATTTCAGAGAAGTTCCTGGATTTCCAGTTTATGGGGTTG CGAATCCCACAATAGATGGTATTGTTTCAGTGATTAAGAGGATTGGCAGATCTAAAGGTTCTCGGCCAGTTTTTTGGCACAACATGAGGGAAGAGCCTGT TATCTACATCAATGGAAAACCATTTGTCCTCCGTGAAGTCGAGAGACCGTACAAAAACATGCTGGAGTATTCGGGAATTGATCGGAAAAGAGTGGAGAGA ATGGAAGCTCGGCTGAAAGAAGATATCCTGAGAGAATCAGAACGTTATGGAGGTGCAATAATGGTCATTCATGAAACAGAGGATGGTCAAATCTTCGATG CCTGGGAGTACGTGAATTCTAAATCTGTGAAGACCCCACTGGAGGTCTTCAGGTGCTTAGAAGCCGATGGTTCCCCTGTTAAATATGCACGAGTGCCTAT CACTGATGGTAAAGCTCCCAAGAGTTCTGACTTCGACTTATTGGCAACAAACATTGCTTCTGCTCCCCAGGAAACTGCTTTTGTGTTCAATTGTCAGATG GGAAGGGGAAGAACAACCACAGGTACAGTTATTGCTTGCCTTGTGAAACTGAGAGTAGAATTTGGGAAACCGATTAAAGTCTTGCACGATGATATAAACC ATGACGAGGAGGATACTGGTAGCTCAAGTGGAGAAGACACAGGAGGGAATTCAGGATCCACCCCTGATACTACTGAAATGATAACTGAGAGGGAGCAAGT CCGTGCCTTTGGCATTGACGATATCCTATTGCTGTGGAAGATAACGAGATTATTTGATAATGGAGTCGAATGCCGCGAGGTTTTAGATGCCATCATCGAC AGATGCTCTGCACTGCAGAACATTCGCCAAGCAGTTCTGCAATATAGGAAGGTGATTAACCAACAACATGTGGAGCCAAGGGTTCGGAGAGTGGCATTGA ATCGTGGTGCTGAATACCTAGAGCGTTATTTCCGGTTGATTGCTTTTGCTGCTTATCTTGGTAGTGGAGCATTTGATGGATTCTGTGGACAAGGAGACTC GAGAATGACTTTCAAGAGTTGGCTACACCAAAGACCTGAGGTTCAAGCAATGAAATGGAGCATAAGATTGAGACCTGGGCGATTCTTCACTATCCCTGCG GCATTAAGAGCACCTGAGGAATCTCAGCATGGAGATGCAGTAATGGAAGCTGCAATCAGGTCCCGTAGTGGTTCAGTTCTGGGGAAAGGCTCCATACTTA AAATGTACTTCTTTCCTGGTCAGAGGACTTCCAGCCATATACAGATCCACGGGGCACCACACGTTTTCAAGGTGGATGGATACCCAGTTTATAGCATGGC AACTCCAACTATTGCTGGTGCTAAGGAGATGCTAAAATATTTAGGAGCCAAGCCCAAGGTTGAGGGCTCAGCGACTCCCAAAGTGATATTGACTGACCTC AGAGAAGAAGCTGTAGTATACATCAATGGAACACCTTTCGTCCTCCGAGAGTTAAATAAACCAGTGGATGCATTGAAACATGTCGGGATCACGGGACCAC TGGTGGAAAGCATGGAAGCCAGACTAAAAGAAGACATAGTCTCGGAGGTGAGGCAGTCCGGTGGACGAATGCTATTGCACCGAGAAGAGTATAATCCAGC TACAAACCAGTCCAGTGTTGTCGGATATTGGGAAAACATAGTTGCGGAGGACGTAAAGACACCTGCTGAGGTGTATGCTGCGCTGGAGGACGAGGGTTAT TGTTTAGCATACAGGAGGATACCATTAACACGTGAAAAGGAAGCTGTGGCTTCTGATGTTGATGCTATCCAGGATCGTAAAGATGATAATGCAGGGTATT ACCTTTTCGTTTCACATACCGGGTTTGGAGGAGTGGCCTATGCAATGGCAATCATTTGTACTCGACTCGGAGCAGAAGGAAATTTTGTCTCAGACATTGG ACCACAACTGTCTGTTTCAGATTCTCTTCCTACTCTAGATGGGAACTTACCCTCTCAATCGTCAAATGAAGAAACTCTTAGAATGGGTGACTATCGAGAC ATACTAAGCCTGACGCGAGTTATAATGTATGGGCCAAAGAGTAAGGCAGATGTCGACATTGTTATAGAGAAGTGTGCAGGAGCAGGACATTTGCGCGACG ATATCTTCCGCTACACCAACAAACTCATAAACTTTTGCGACGGAGATGATGAGCGGCGTGCACACCTCTTGGATATGGGCATTAAGGCTTTAAGGCGGTA CTTCTATCTGATAACATTCAGATCATACCTGTACAGCACGAGGCCGACAGAGGTGAGATTCGTGGAGTGGATGAAGGGAAGGCCTGAACTGGGGAATCTC TGCAATAATCTGAGGATAGATAAATGA
AA sequence Show only first row Show all	>Lus10038011 pacid=23163823 polypeptide=Lus10038011 locus=Lus10038011.g ID=Lus10038011.BGIv1.0 annot-version=v1.0 MLLPFLPSLYIRSHYCCATAKELLVPRFSPTRERRRKYDDDDDKLSCVRDRKYLAGFFGEMSIPKEPEHVMKLRGGSVLGKKTILKSDHFPGCQNKRLTP PIDGAPNYRQADTLPVHGVAIPTVEGIRNVIKHIRGRKDGKRAQVLWFNLREEPLMYINGRPFVLRDVERPFSNLEYTGINRFRVEQMEARLKEDILMEA ARYGNKILVTDELPDGQMVDQWEPVSSDSVYEELQVEGYHFDYERVPITDEKSPEETDFDVLVDRIYQTDLTSDIIFNCQMGRGRTTTGMVIATLVYLNR IGSSGIPRSNSVGRVCDLGSAVNDNVLNSEEAIRRGEYGVIRSLTRVLEGGVEGKRQVDKVIDKCASMQNLREAIATYRNSILRQPDEMKREASLSFFVE YLERYYFLICFAVYIHSERDALRSSSFGHSSFADWMKARPELYSIIRRLVRRDPMGALGYASSKPSLRKIAESADGRPYEMGVVAASRNGEVLGSQTVLK SDHCPGCQNTHLPERVEGAPNFREVPGFPVYGVANPTIDGIVSVIKRIGRSKGSRPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYSGIDRKRVER MEARLKEDILRESERYGGAIMVIHETEDGQIFDAWEYVNSKSVKTPLEVFRCLEADGSPVKYARVPITDGKAPKSSDFDLLATNIASAPQETAFVFNCQM GRGRTTTGTVIACLVKLRVEFGKPIKVLHDDINHDEEDTGSSSGEDTGGNSGSTPDTTEMITEREQVRAFGIDDILLLWKITRLFDNGVECREVLDAIID RCSALQNIRQAVLQYRKVINQQHVEPRVRRVALNRGAEYLERYFRLIAFAAYLGSGAFDGFCGQGDSRMTFKSWLHQRPEVQAMKWSIRLRPGRFFTIPA ALRAPEESQHGDAVMEAAIRSRSGSVLGKGSILKMYFFPGQRTSSHIQIHGAPHVFKVDGYPVYSMATPTIAGAKEMLKYLGAKPKVEGSATPKVILTDL REEAVVYINGTPFVLRELNKPVDALKHVGITGPLVESMEARLKEDIVSEVRQSGGRMLLHREEYNPATNQSSVVGYWENIVAEDVKTPAEVYAALEDEGY CLAYRRIPLTREKEAVASDVDAIQDRKDDNAGYYLFVSHTGFGGVAYAMAIICTRLGAEGNFVSDIGPQLSVSDSLPTLDGNLPSQSSNEETLRMGDYRD ILSLTRVIMYGPKSKADVDIVIEKCAGAGHLRDDIFRYTNKLINFCDGDDERRAHLLDMGIKALRRYFYLITFRSYLYSTRPTEVRFVEWMKGRPELGNL CNNLRIDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62010			unknown protein		Lus10038011 [exp]	0	1
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	2.6	0.7908
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	3.2	0.7801
AT5G27260			unknown protein		Lus10006034 [exp]	4.0	0.7070
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	6.5	0.7105
AT3G61960			Protein kinase superfamily pro...		Lus10030182 [exp]	9.5	0.6911
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	15.5	0.7274
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Lus10019368 [exp]	16.6	0.7165
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	17.0	0.6426
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	22.4	0.7003
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	23.7	0.6473

Compare expression of checked genes

Lus10038011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.