Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) AT5G18380 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) AT3G04230 243 / 5e-84 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009252 [exp] 306 / 9e-109 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10035133 [exp] 290 / 1e-102 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10031970 [exp] 290 / 1e-102 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10034378 [exp] 288 / 7e-102 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) Lus10012599 [exp] 286 / 4e-101 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304700 [exp] 274 / 3e-96 AT2G09990 267 / 9e-94 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.008G150000 [exp] 273 / 4e-96 AT2G09990 262 / 1e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.010G091000 [exp] 272 / 1e-95 AT2G09990 260 / 7e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10038012 pacid=23163720 polypeptide=Lus10038012 locus=Lus10038012.g ID=Lus10038012.BGIv1.0 annot-version=v1.0 ATGGCGGCGCCGGCAGCAACGGGAGCATCTCCGATCGAGTCAGTCCAGTGCTTCGGTCGCAAGAAGACCGCGGTGGCCGTCACCCACTGCAAGAGAGGAA GAGGCCTGATCAAGCTCAACGGTACACCCATCGAGCTCGTGGAGCCCGAGATACTACGCTTCAAGGCCGTGGAGCCGATCCTTCTCCTCGGCCGTCAGCG CTTCAGCGGCGTTGACATGAGGATCCGCGTCAAGGGAGGAGGACACACATCCCAAATCTACGCCATCCGTCAGAGCATCGCCAAGGCGCTTGTGGCTTTT TACCAGAAGTTCGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACCTTCTCATCAGGTACGATAGGACTCTCTTGGTTGCTGATCCCAGGAGGTGCGAGC CTAAGAAGTTCGGTGGTCGTGGTGCCCGTTCTAGGTTTCAGAAGAGTTACCGTTGA
AA sequence Show only first row Show all	>Lus10038012 pacid=23163720 polypeptide=Lus10038012 locus=Lus10038012.g ID=Lus10038012.BGIv1.0 annot-version=v1.0 MAAPAATGASPIESVQCFGRKKTAVAVTHCKRGRGLIKLNGTPIELVEPEILRFKAVEPILLLGRQRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAF YQKFVDEQSKKEIKDLLIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10038012 [exp]	0	1
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	1.4	0.8794
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	2.8	0.8366
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	4.2	0.8609
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	5.5	0.7970
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	8.8	0.8448
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Lus10043348 [exp]	9.9	0.8052
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10024560 [exp]	13.0	0.8201
AT3G02080			Ribosomal protein S19e family ...		Lus10020836 [exp]	13.9	0.8278
AT1G14300			ARM repeat superfamily protein...		Lus10037185 [exp]	14.7	0.8125
AT2G31410			unknown protein		Lus10031995 [exp]	17.5	0.7936

Compare expression of checked genes

Lus10038012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.