Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62020 327 / 7e-115 GLP10 germin-like protein 10 (.1.2) AT1G02335 305 / 4e-106 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G09560 296 / 9e-103 GLP5 germin-like protein 5 (.1) AT5G26700 263 / 8e-90 RmlC-like cupins superfamily protein (.1) AT3G05930 252 / 2e-85 GLP8 germin-like protein 8 (.1) AT1G18980 206 / 4e-67 RmlC-like cupins superfamily protein (.1) AT1G18970 201 / 5e-65 GLP4 germin-like protein 4 (.1) AT5G39160 192 / 1e-61 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 191 / 2e-61 RmlC-like cupins superfamily protein (.1) AT5G39190 191 / 2e-61 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009254 [exp] 350 / 1e-123 AT3G62020 306 / 1e-106 germin-like protein 10 (.1.2) Lus10032016 [exp] 231 / 5e-77 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10032015 [exp] 224 / 2e-74 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 223 / 6e-74 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035185 [exp] 221 / 3e-73 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 221 / 5e-73 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030047 [exp] 217 / 1e-71 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 216 / 7e-71 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 218 / 9e-71 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110400 [exp] 347 / 7e-123 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 346 / 1e-122 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.005G001300 [exp] 320 / 4e-112 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.013G000500 [exp] 311 / 1e-108 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.015G068200 [exp] 222 / 2e-73 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 214 / 1e-70 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 213 / 6e-70 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 213 / 7e-70 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 213 / 7e-70 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 208 / 5e-68 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10038014 pacid=23163888 polypeptide=Lus10038014 locus=Lus10038014.g ID=Lus10038014.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCCGCCACCGCCGTCATCTCCTACCTCCTCTTCTTCTCCGCCATCTCCGCCGTCACCTTCGCCTCCGACCCCGACATGCTCCAGGATATCT GCGTCGCCGATACCTCCTCCGGACCTAAATTGAACGGATTCCCCTGCAAGCCGGACGCGAACGTGAGCGCGGCGGACTTCTTCTTCGCCGGGATCGCGAA TCCAGGTGTGGTGAACAACTCCGTCGGGTCGCTAGTCACGGGCGCGAATGTCGAGAAGATCCCGGGGCTGAACACGCTAGGAGTCTCCATGTCGAGGATC GATTACGCTCCCGATGGGTTGAACCCGCCGCACACGCACCCACGCGCCACCGAGATTGTGTTCGTCTTGGAAGGCGAGCTGGACGTCGGGTTCATAACCA CCTCCAACAAGCTGGTGTCGAAGTCGCTGAAGAAGGGGGAGGTGTTCGTATTCCCGAGAGGGTTAGTCCACTTCCAGAAGAACAACGGGAAGAAGCCGGC GGCGGTGATCGCCGGATTCACCAGCCAGCTCCCCGGAACGCAGTCGATCGCCGCCCCTCTGGTCTCCGCGACGCCGGCAGTGCCGGACAATGTTCTGACG AAGGCGTTCCAGATCGGGACTAAGGAAGTTGAGAAGATTAAGTCCAAGTTTGGTCCTAAGAAATGA
AA sequence Show only first row Show all	>Lus10038014 pacid=23163888 polypeptide=Lus10038014 locus=Lus10038014.g ID=Lus10038014.BGIv1.0 annot-version=v1.0 MAASATAVISYLLFFSAISAVTFASDPDMLQDICVADTSSGPKLNGFPCKPDANVSAADFFFAGIANPGVVNNSVGSLVTGANVEKIPGLNTLGVSMSRI DYAPDGLNPPHTHPRATEIVFVLEGELDVGFITTSNKLVSKSLKKGEVFVFPRGLVHFQKNNGKKPAAVIAGFTSQLPGTQSIAAPLVSATPAVPDNVLT KAFQIGTKEVEKIKSKFGPKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	0	1
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	1.7	0.9917
AT1G02570			unknown protein		Lus10010004 [exp]	1.7	0.9838
AT1G58070			unknown protein		Lus10015482 [exp]	2.4	0.9866
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	2.6	0.9829
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	2.8	0.9827
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	3.3	0.9810
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	5.0	0.9831
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	5.3	0.9836
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10000788 [exp]	6.7	0.9822
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	6.9	0.9829

Compare expression of checked genes

Lus10038014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.