Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01660 748 / 0 ATABC1, ATATH10, ABC1At ABC transporter 1 (.1) AT5G64940 113 / 6e-26 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 109 / 5e-25 Protein kinase superfamily protein (.1) AT3G07700 107 / 5e-24 Protein kinase superfamily protein (.1.2.3) AT5G50330 97 / 4e-21 Protein kinase superfamily protein (.1.2) AT5G24810 97 / 2e-20 ABC1 family protein (.1.2) AT1G79600 90 / 2e-18 Protein kinase superfamily protein (.1) AT4G24810 87 / 4e-18 Protein kinase superfamily protein (.1.2.3) AT1G71810 87 / 9e-18 Protein kinase superfamily protein (.1) AT2G39190 81 / 8e-16 ATATH8 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010085 [exp] 919 / 0 AT4G01660 780 / 0.0 ABC transporter 1 (.1) Lus10007201 [exp] 911 / 0 AT4G01660 778 / 0.0 ABC transporter 1 (.1) Lus10009257 [exp] 161 / 3e-47 AT4G01660 78 / 2e-18 ABC transporter 1 (.1) Lus10005833 [exp] 158 / 6e-45 AT4G01660 129 / 6e-35 ABC transporter 1 (.1) Lus10036636 [exp] 110 / 5e-25 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 102 / 2e-22 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026971 [exp] 102 / 2e-22 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10012317 [exp] 102 / 4e-22 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035853 [exp] 99 / 3e-21 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185400 [exp] 817 / 0 AT4G01660 691 / 0.0 ABC transporter 1 (.1) Potri.007G082500 [exp] 110 / 7e-25 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 109 / 1e-24 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 107 / 4e-24 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 102 / 2e-22 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G091000 [exp] 96 / 2e-20 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 95 / 2e-20 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.018G003600 [exp] 95 / 5e-20 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.010G221000 [exp] 93 / 2e-19 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G003400 [exp] 92 / 4e-19 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10038017 pacid=23163839 polypeptide=Lus10038017 locus=Lus10038017.g ID=Lus10038017.BGIv1.0 annot-version=v1.0 ATGAGTTCTTCGTTCAAGCACGTAAGCAGGCTCCTCGAAGGCGTCTCTCTGGTCGCCAAGGAGATAGTAAAGCGTTCTTCCCCTCCACTGGACGCCGCCT CCTCCAAGGCGGACTTCGAATCCCTAATCGCATCCACCGCCAGAAAGGCATTGCTCGCCGCTACCGACTTGTCCGGTCTCACCAGAGGGAAACAGCGCGA GTTCTCCGCTCCTCGGCCTAAGGAGTCCGTCGTTTACTTCGATCGATCGAATTCCGGGGCGGAACCGGATTCGGAACCGATCCGCGTCCACATACCACCG TCGGCAGATCGCGCCGACAGTGATGCAACGGTGGTTGTTGCAGAGAAGGTGCACGAGGATAATGTACCTGATAAGGATGGAGTCAGTGTAGTGGTGAAGC ACGATTTGCCTAGGGAAATTAAGGATCGGAATCTGGAAGAGATCGGAGATGTCGTCGGCGAAGAGGTATCTACGCCGGCCACAGCAGCCGGAAGGACAGC CCCGACTACGGCGGAGCAGAAGAGGAGGAAATTAAGGGAGCGAAGAGTTCCTTCAACTTCATTTTCCAGGGCTCTCGGGTTTGCTGGTCTAGGAGCTGGT CTTGTATGGGGGACAGTTGAAGAAGCTACGAAGAGGTTTGTCTATGGCACGCCAACTTCACCAGAAGGAAAGCAATCCGCTCTTTCCCCATTCTTATCCG AAAAGAATGCAGAGCGTTTGGCGGTTGCGCTTTGCAGAATGCGTGGAGCTGCCCTCAAAGTTGGACAGATGTTGAGTATACAAGATGAATCTCTCGTTCC TGCTCCAATCTTGGCTGCATTAGATATCGTTCGTCAGGGAGCAGATGTGATGCCGAGGAAGCAGCTTAATCAGGTTTTGGATGCTGAATTGGGTCCTGAT TGGTCTACCAAGTTGACCAGTTTCGATTATGAGCCACTTGCTGCTGCCAGTATAGGCCAGGTGCACCAGGCAGTAACCAAAGATGGGATGAAAGTTGCAA TGAAAATTCAATACCCTGGTGTTGCTGACAGCGTCGAGAGTGACCTTGACAACGTAAAGCTTCTTTTGGATTATACCAACTTAATTCCAGAAGGGCTCTA TCTTGACCGCGCAATGAAGGTGGCGAAGGAGGAATTAACTCGTGAATGCGACTACGAGCTGGAGGCAGTGAACCAGAAACGTTTCCGTAACCTCATCTCT AACAAGAAAGGGTTCTATGTCCCCATTGTTGTTGATGAGCTTTCAAGCAAAAGAGTCCTTACCAGCGAGCTCGTTTCAGGAGTTTCCATTGACAAGGTTA CATCACTAGACCAGGAAACAAGGAATTACGTTGGGAGGAAGTTACTGGAGCTCACAATGATGGAGCTCTTTGTCCTCCGCTTTATGCAGACCGATCCTAA CTGGGGCAACTTCTTATACGATGATGCCACAAAGACCATCAACCTCATAGACTTCGGTGCAGCTAGGGACTACCCGAAACGCTTCATCGATGACTATTTA AAAATGGTTCTGGCGTGTGGAAACCGTGACAGAGACACAGTGCTGGAGATGTCGAGAATTCTTGGCTTCCTCGCCGGAGAAGAATCGGAAGAAATGCTGG ACGCTCACGTCGAAGCTGCTTTTGTGGTCGGAATGCCTTTCGCCAAACCCGGCGGAGGGTACAATTTCCGGGAGAACAAAATGACGCAGGATGTGACGAT GCTGGGTGCCAAAATGCTGAAGCACAGGCTGACGCCGCCTCCCGACGAGGCCTACAGCCTTCATAGGAAGCTCTCCGGCGCCTTCTTGGCCTGCATCAAG CTTGGCTCCGTTGTGCCTTGCCGGGAAATGTTGATCGACATCTACGATCATCATCAGTTCGGCGGCGAAGCCGATGATTGTGACGTGGTCGTCAAGTAG
AA sequence Show only first row Show all	>Lus10038017 pacid=23163839 polypeptide=Lus10038017 locus=Lus10038017.g ID=Lus10038017.BGIv1.0 annot-version=v1.0 MSSSFKHVSRLLEGVSLVAKEIVKRSSPPLDAASSKADFESLIASTARKALLAATDLSGLTRGKQREFSAPRPKESVVYFDRSNSGAEPDSEPIRVHIPP SADRADSDATVVVAEKVHEDNVPDKDGVSVVVKHDLPREIKDRNLEEIGDVVGEEVSTPATAAGRTAPTTAEQKRRKLRERRVPSTSFSRALGFAGLGAG LVWGTVEEATKRFVYGTPTSPEGKQSALSPFLSEKNAERLAVALCRMRGAALKVGQMLSIQDESLVPAPILAALDIVRQGADVMPRKQLNQVLDAELGPD WSTKLTSFDYEPLAAASIGQVHQAVTKDGMKVAMKIQYPGVADSVESDLDNVKLLLDYTNLIPEGLYLDRAMKVAKEELTRECDYELEAVNQKRFRNLIS NKKGFYVPIVVDELSSKRVLTSELVSGVSIDKVTSLDQETRNYVGRKLLELTMMELFVLRFMQTDPNWGNFLYDDATKTINLIDFGAARDYPKRFIDDYL KMVLACGNRDRDTVLEMSRILGFLAGEESEEMLDAHVEAAFVVGMPFAKPGGGYNFRENKMTQDVTMLGAKMLKHRLTPPPDEAYSLHRKLSGAFLACIK LGSVVPCREMLIDIYDHHQFGGEADDCDVVVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	0	1
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	1.4	0.9084
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	4.2	0.8478
AT1G11390			Protein kinase superfamily pro...		Lus10018416 [exp]	4.5	0.8685
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	5.1	0.8400
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	6.2	0.8612
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	6.9	0.8568
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	7.5	0.8489
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017759 [exp]	8.5	0.8483
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	10.1	0.8350
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	10.5	0.8433

Compare expression of checked genes

Lus10038017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.