Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48750 126 / 2e-34 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G01560 120 / 2e-31 ATMPK11 MAP kinase 11 (.1.2) AT3G59790 119 / 5e-31 ATMPK10 MAP kinase 10 (.1) AT1G66750 118 / 7e-31 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G10210 117 / 3e-30 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT1G20930 115 / 3e-30 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT4G36450 116 / 6e-30 ATMPK14 mitogen-activated protein kinase 14 (.1) AT4G01370 115 / 1e-29 ATMPK4 MAP kinase 4 (.1) AT2G18170 114 / 3e-29 ATMPK7 MAP kinase 7 (.1) AT1G73690 113 / 7e-29 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009258 [exp] 486 / 4e-175 AT3G48750 145 / 3e-41 cell division control 2 (.1) Lus10038755 [exp] 118 / 1e-31 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10007921 [exp] 119 / 5e-31 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 118 / 1e-30 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10025986 [exp] 117 / 2e-30 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10014283 [exp] 117 / 4e-30 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10008339 [exp] 117 / 5e-30 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 117 / 6e-30 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10021611 [exp] 115 / 8e-30 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133500 [exp] 135 / 6e-38 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.005G231100 [exp] 119 / 4e-31 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.008G008400 [exp] 117 / 5e-31 AT3G48750 293 / 3e-99 cell division control 2 (.1) Potri.002G162500 [exp] 118 / 1e-30 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.017G010200 [exp] 118 / 1e-30 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.005G257500 [exp] 116 / 2e-30 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.014G088500 [exp] 115 / 1e-29 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.002G032100 [exp] 114 / 3e-29 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.007G139800 [exp] 114 / 3e-29 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 113 / 6e-29 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038018 pacid=23163907 polypeptide=Lus10038018 locus=Lus10038018.g ID=Lus10038018.BGIv1.0 annot-version=v1.0 ATGGCGGACAAATGCGAGCAGCGGTGCAGACCGATTGCACTGGAAACAAACGACTGCTCTGGTTCGGTGTGGAGATGCTATGACGAGTGGACTGGGATTA TCGTCTCCGTCAATAAGATATATGCTGCTGATATGAACAGAATCGCTGCTTTAATGAGAGAAGTCACCCTTCTCTTGGAACTGAATCATCCCAACATTAT AAGATTCGTAGATGTGGTGATGTACTCGGATAATATCGAGCTTGTTTCTGAGCATTTCGACTGCGACATGCTAATGTACATCGAGAAGAATCAACAGATG CTTACTCAAGATACGATAAGAGACTTCTTGCGTCAGATACTGCAAGGCCTTGCGTACTGCCATTCCAAGAATATTGTCCATGGGAAGTTGAGTCCCAAGA ATCTGCTGATAGACTGCACAAGTAGCACCGTGAAGCTTTCTGGTTTAGGTCTGGCTGGAACTGATGCCGTTTGCCACACCACAAATCATTTAATGGTGCA ACCAGAATCATACACTCCATGGGAGATAGCATCAGCGTACAAGGCACCTGAGGTCCTTCTGCTTCCGGACGATCGGTCTTTCCCAGCCGATGTGTGGTCT GCAGGCTGTATATTGGCTCTGCTACTTACCAGGCAGCATCTGTTCATAATGAAGAACAAGCAGGGTCACATTCCATCAACAACTCAGCAGGACCACATTA TCAGAACGTTGAAGAGCAAGGATTTGTCAGGGAAGTTGGATTTGAGTGATGCAGCTGGCCTTGATCTGATCAATAGAATGTTGTGGTTCGATCCGAAACA GAGGATTACAGCAAGTGATGCTATGGCGCACGAGTACCTTAACTCAATGGAGGAGTTTGCTTGA
AA sequence Show only first row Show all	>Lus10038018 pacid=23163907 polypeptide=Lus10038018 locus=Lus10038018.g ID=Lus10038018.BGIv1.0 annot-version=v1.0 MADKCEQRCRPIALETNDCSGSVWRCYDEWTGIIVSVNKIYAADMNRIAALMREVTLLLELNHPNIIRFVDVVMYSDNIELVSEHFDCDMLMYIEKNQQM LTQDTIRDFLRQILQGLAYCHSKNIVHGKLSPKNLLIDCTSSTVKLSGLGLAGTDAVCHTTNHLMVQPESYTPWEIASAYKAPEVLLLPDDRSFPADVWS AGCILALLLTRQHLFIMKNKQGHIPSTTQQDHIIRTLKSKDLSGKLDLSDAAGLDLINRMLWFDPKQRITASDAMAHEYLNSMEEFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038018 [exp]	0	1
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	4.2	0.7099
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	11.3	0.6824
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	12.0	0.7346
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10032669 [exp]	12.2	0.6914
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10024101 [exp]	15.6	0.7252
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10012285 [exp]	18.7	0.6672
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	28.4	0.6962
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10041177 [exp]	29.2	0.6648
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	34.1	0.6910
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	36.0	0.6559

Compare expression of checked genes

Lus10038018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.