Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46980 134 / 4e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009259 [exp] 1299 / 0 AT2G46980 258 / 2e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111500 [exp] 409 / 2e-129 AT2G46980 303 / 2e-90 unknown protein Potri.002G186200 [exp] 390 / 2e-122 AT2G46980 312 / 1e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038019 pacid=23163879 polypeptide=Lus10038019 locus=Lus10038019.g ID=Lus10038019.BGIv1.0 annot-version=v1.0 ATGGGTGTTGAAACGCGGAGGGGATTGCAAGATGATGGAGCCAGTGATGCTCGAAGTTTGGGTAGCAATTACCATCCGTCTAGCCAGTCACGGAAGATGT CTGTTGGAATTCTGATAGATTCATTAGCAAACAAAAGAATGGCGAAGGATGATGCGGTTGTGCCAAACGAAGAAATCAAAACTGCTCCTGGTGACGAGAA GGATAAAGGGAAAGATGTAGCTGCAAAAGAAGGGAAACCATCAGAAGCTCTGGAGCAGGTTACTTCCCCGTGGATTACCACCAAGTCACCAAACCAAGCA GCTGAGAATTCTCTCAACAGGAGAGAAACTTCGAAACCATCATCAGCTGGTGGATCAGCTGGTGGATCGAAGAAGACGCTTAGGAACCAGAAGGGTCCAC CTGTGAACCATTCAGTTAAGTTTTTTGCAAATTCGAATTTGCCTTCTATTGATGGCGAGGAGAAGTTAAGCAATGGGCTAACATATAAAAGGAAGGAAAG TAGGAGTAGGAGTTCACGGAGGGAGGATGATTTCACATTTCCAACTGCACATGACATCCCTGTGTCAGATAAAGCAGTGACAGGTGATACAGCTGAGCCT AAGACTGACATTTTGAAGACGAAACTATGGGAGATTTTAGGGACGATTTCTTCACCTAAAAGTCAGCCTTCAAATATTAAGGGCCAGGATTTAGGTGGAA GCAGTTTGAAGCCAGAGAAAGTAACTGGCAGCAATGGTGATCCAGATATCAGGTCCAAAAATAATTCAGAACCCATTGAAACTGATTCTGAAACTCCTGC TCATTCTATGAAGAGACCGGTGAGACGTGCTTCTGTGCGGAAGAGATTATCCACCAAGAGACAGCCGCCCAAAGCTAGAAAGGGTCCATGTTCTACTTTC ACAAAGAAGTTAGCAAAGAACAATGTCTTTACCTTTGATGAAGGACTGGCAGACAAAGGAGAACTTGCTGTGCGTGGTAATCCCTCTACACCAACTAGGT CCAAAAGCAAGGCTCAAACGAAGAAAGCTACTACCGCACCACGTAAGAGAAGCTTCACTAATGACAGTGATTCTGGTAATTTCAAAAGACAAGAAAAAGA CGTGCCTGCAGCCACTGGCAAGACATCTTCACATAGCTCTAAAATGGCAAATTTGTGTAATGACGCTCAGAAAGATGGACGTCAACAAAGTTTCTCCCAT CAATTTCCTAGGGAAGATTCCCATCAGTGTGTGGAGGAGCCAGAACTGAGTGTGGGTGAGGGTTTCACACATCCAACAATACCAAGAGATGGAGATCAGC ATCAGGATTTTGTGGGTGAGGGTTTCACGCATCCAACAATACCAAGATATGAAGATCAGCATCAGGATTTTGGTTGTTCTCCCTTCAACAAAACCGTAAG TCCACAGGAATATATGGGAAGTCCAACGCTAAAATTCAGCTCTCCTGTGTCGAGTTCATCCCCTAGTTCACCACAACCTGAGCTGTGTAGAACCCCAGTC CACAGCCCTGTCCTATCACAAAAAAGCAGCCCGTTGGGGATCATGTTTCATTTCAGGACTTCCGGAGCATCAAAAGCTGGTGGTTCTGCTGCAAATTCCG AGACAGATGCATCCGTATCCTTAAATATTTATGGTCTCAATTTCCTTGATCAACTTCAGGATGACGGTGTAGCGGTAACTAAAGAGACCCCGGAAGTACA ATCATTACCAGATAAGGTGGTAAAGGATGGAGATGGAAGCATTCATTCATTGTCTGAAGATCGGTACTATGAGAGTTCTGATGAGGGTACACCAATAGCA GAAGGGGAAACCAACATCCCTTTTCCAGAGCCGGAAGCTAGAGGGAGATCGGAGTCCAAATCTAATTCAGCCAAAAGGCAGCGCACTCAAGAAAGAGACA GCGAACTGAGCTCCAATGACAATGGATGGACCCAGGTGCTTGACGAAAATTTCAGTGGGGACGAATATGAAAGGGTCGTGATGCTCTTTGCAATGGCTCT AGAAAACTACGTAAAGAAAGTTAAGTCGGCTACCATGTCGAAATCCTCTGAGATTATGATGGCAGTTTCGAAAGATATTCATCAACTGTTGCATAATGTC AAGCTCCAAATGCAAGAGGACATGGTGAATATGACGACTACCAGCACTTCCAAAAGGAAAAGAGTGGAAGCAAGCTTCCAAGAACAAGCGGACCAACTGA AGGCGATACACGAAAAATTCGAGCAGGACATTCACCAATGTCTTAGGAACTACAAATCCACACTTGAAGGACTCGAAGGACACCAGAATGAACTGAAGGA GACAATTAAAAAGAAACAAGCTTCCCACCAGAAAATTTTGGTGCAAGTAGAAGAAACCGTGGAGACAATGCTCGCTGATGCACAAAGAAAGATTCAAGCC GTGGACAAGGCAAGTTCCCTCTCCTACTTACACTTCACCGATACGATCGAGATCGATCAACATTTAACATTTCAAGTCGTCTGTGTTTGCAGAAGAGCAA GGAAAAGATGGTGGAACTGA
AA sequence Show only first row Show all	>Lus10038019 pacid=23163879 polypeptide=Lus10038019 locus=Lus10038019.g ID=Lus10038019.BGIv1.0 annot-version=v1.0 MGVETRRGLQDDGASDARSLGSNYHPSSQSRKMSVGILIDSLANKRMAKDDAVVPNEEIKTAPGDEKDKGKDVAAKEGKPSEALEQVTSPWITTKSPNQA AENSLNRRETSKPSSAGGSAGGSKKTLRNQKGPPVNHSVKFFANSNLPSIDGEEKLSNGLTYKRKESRSRSSRREDDFTFPTAHDIPVSDKAVTGDTAEP KTDILKTKLWEILGTISSPKSQPSNIKGQDLGGSSLKPEKVTGSNGDPDIRSKNNSEPIETDSETPAHSMKRPVRRASVRKRLSTKRQPPKARKGPCSTF TKKLAKNNVFTFDEGLADKGELAVRGNPSTPTRSKSKAQTKKATTAPRKRSFTNDSDSGNFKRQEKDVPAATGKTSSHSSKMANLCNDAQKDGRQQSFSH QFPREDSHQCVEEPELSVGEGFTHPTIPRDGDQHQDFVGEGFTHPTIPRYEDQHQDFGCSPFNKTVSPQEYMGSPTLKFSSPVSSSSPSSPQPELCRTPV HSPVLSQKSSPLGIMFHFRTSGASKAGGSAANSETDASVSLNIYGLNFLDQLQDDGVAVTKETPEVQSLPDKVVKDGDGSIHSLSEDRYYESSDEGTPIA EGETNIPFPEPEARGRSESKSNSAKRQRTQERDSELSSNDNGWTQVLDENFSGDEYERVVMLFAMALENYVKKVKSATMSKSSEIMMAVSKDIHQLLHNV KLQMQEDMVNMTTTSTSKRKRVEASFQEQADQLKAIHEKFEQDIHQCLRNYKSTLEGLEGHQNELKETIKKKQASHQKILVQVEETVETMLADAQRKIQA VDKASSLSYLHFTDTIEIDQHLTFQVVCVCRRARKRWWN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46980			unknown protein		Lus10038019 [exp]	0	1
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Lus10030371 [exp]	1.7	0.9485
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	2.4	0.9520
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	2.6	0.9421
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	3.9	0.9446
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	4.6	0.9524
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	7.5	0.9409
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	7.9	0.9404
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	11.7	0.9178
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10001517 [exp]	12.2	0.9257
AT4G17000			unknown protein		Lus10035651 [exp]	12.3	0.9466

Compare expression of checked genes

Lus10038019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.