Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62080 307 / 1e-100 SNF7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009262 [exp] 425 / 3e-147 AT3G62080 335 / 1e-111 SNF7 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186100 [exp] 378 / 2e-128 AT3G62080 426 / 3e-147 SNF7 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10038021 pacid=23163874 polypeptide=Lus10038021 locus=Lus10038021.g ID=Lus10038021.BGIv1.0 annot-version=v1.0 ATGAGAAACGCCACCACAATCCCGGCGGAAGAATTGAACCTGTCTCCGGTGCCTCCGCCTGCTTCCGCGTCATCCCAAGACGAAGATGACGACGACGGAA AGAGCTCAGATTTCTCTACTCCAAAGGCGAAGGAGCACCTGATTCCGGATCCAGTGACTTGTCCTCCGCCGCCGGTAAGAGCTCCAAGGAAGCGCATGAT CTCCCCCGAAGATATTCGTCATCTAGCCAGGAGGTCCCGGACGGTGAAGAATGAGTGGTTTAATCGAGGAGGGTTGACTCCTCTATGCCTCGACCATGTA CTGACATTGATGTATAATGAAGGTGATATTGCTCCGTTTTCGAGTCTTGTTGATCCGAGGAGCTGGCGAGTTTCGCAGTTGTTTAGGAAAGTCAGAAATT TGATGGTCAGAACAACTGTGAATGTGGACATAATGCTTGAAGATCATGTTTTTCTTGTAGCATTGGTCAAGGATAGAGCTACAGAGATTATGAATCTGTT ATCCGAAAGCCACTGGACGACTGCATGCATTGTCACTATGGAGAAGTTTCAAGTTATGTGTGGTGGAAAGAATGAAGCATCTGCTGTCCTGAGTTACTTA ACCGGACATGGAAAAGCTCGGTATCTTTCGACGACGACGAATAAGAAGGAATCGATAGAGGGAATCAAGGTTTCACTGTCACCTGAAGCTGTAGCTCAAA TATCTAGCCTGGATTGTGATGTTCTTCATTTAATATGGACTGTAGAAAAGCTTCAGCAACAAATTTCCGTGATTGACCAACGTCATAAATTGTCCAAAAG ATTAGCTTTGGCTTCATTGAAGTCTGGAAACAAGAAAGTTGCCCTCAGGCATGCAAGGGAAATGAAGTTAGCATCAGTTAGTGGAGAGAAGTGTGTCTCA CTTTTGAACAGGGTGGAGCAAATTCTTGATGTTATTGCTAATGCAGAGTCCACCAAAAAGGTATCTGAGGCCATGCAACTTGGAGCTCGGGTAATGAAGG AAAACAAATTGACAGTGGGGGAGGTTGAGCTGTGTTTAGAACAAGTTGAGGAGACAATCCATTCACAACTGCAAGTTGATAAAGCTCTAGAATCAACTCC ATCTTACATTGGTATCGATGATGACGATATTGAAGAAGAGTTGGAAAAATTAGAACTAGGTATAACAAGAGAAGCATTTAATCCCCAAGTCAGCCCAACA GTACCAGTAGATGCTGCAGAACCAACAGATCCATTAAGTGATGCTATGTCAAATCTCAAACTTCAGGATGTTCCTGCCGAAGAGAGCAGCAAATCACAAA GTGCCGCACTTGAAGCAGCTTAA
AA sequence Show only first row Show all	>Lus10038021 pacid=23163874 polypeptide=Lus10038021 locus=Lus10038021.g ID=Lus10038021.BGIv1.0 annot-version=v1.0 MRNATTIPAEELNLSPVPPPASASSQDEDDDDGKSSDFSTPKAKEHLIPDPVTCPPPPVRAPRKRMISPEDIRHLARRSRTVKNEWFNRGGLTPLCLDHV LTLMYNEGDIAPFSSLVDPRSWRVSQLFRKVRNLMVRTTVNVDIMLEDHVFLVALVKDRATEIMNLLSESHWTTACIVTMEKFQVMCGGKNEASAVLSYL TGHGKARYLSTTTNKKESIEGIKVSLSPEAVAQISSLDCDVLHLIWTVEKLQQQISVIDQRHKLSKRLALASLKSGNKKVALRHAREMKLASVSGEKCVS LLNRVEQILDVIANAESTKKVSEAMQLGARVMKENKLTVGEVELCLEQVEETIHSQLQVDKALESTPSYIGIDDDDIEEELEKLELGITREAFNPQVSPT VPVDAAEPTDPLSDAMSNLKLQDVPAEESSKSQSAALEAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	0	1
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	1.0	0.8928
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	1.4	0.8657
AT2G04865			Aminotransferase-like, plant m...		Lus10007358 [exp]	3.2	0.8375
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10037127 [exp]	4.5	0.8443
AT4G15030			unknown protein		Lus10029514 [exp]	8.8	0.8399
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	10.4	0.8617
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	11.0	0.8383
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	14.1	0.8066
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	14.5	0.8264
AT5G50840			unknown protein		Lus10040383 [exp]	15.1	0.8434

Compare expression of checked genes

Lus10038021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.