Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01670 111 / 3e-29 unknown protein AT3G62070 99 / 1e-24 unknown protein AT2G46940 97 / 8e-24 unknown protein AT2G31560 60 / 1e-10 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 59 / 2e-10 Protein of unknown function (DUF1685) (.1) AT1G05870 59 / 3e-10 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT1G08790 40 / 0.0005 Protein of unknown function (DUF1685) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009965 [exp] 219 / 1e-70 AT2G46940 89 / 4e-21 unknown protein Lus10007198 [exp] 149 / 2e-43 AT2G46940 157 / 1e-46 unknown protein Lus10010083 [exp] 137 / 1e-38 AT2G46940 160 / 7e-48 unknown protein Lus10027022 [exp] 59 / 6e-10 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10025562 [exp] 58 / 7e-10 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10021997 [exp] 40 / 0.0004 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10042536 [exp] 40 / 0.0004 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 40 / 0.001 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111000 [exp] 162 / 2e-48 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 138 / 8e-39 AT2G46940 111 / 4e-29 unknown protein Potri.007G126700 [exp] 62 / 3e-11 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 55 / 7e-09 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.005G055100 [exp] 45 / 1e-05 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.013G042400 [exp] 45 / 1e-05 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038023 pacid=23163827 polypeptide=Lus10038023 locus=Lus10038023.g ID=Lus10038023.BGIv1.0 annot-version=v1.0 ATGGCGTCCGATGAAACCTCCGCCGTACTTTCTCCCCCCGTCCACGACGACTTCGATCACTACCACGACCACGACGACGGCTACGACCTCCATCATTCAC ACCCTCACAGCTCCCATAACCTCTCCAGGCTCTCTGTCTGCACCAGCTCCATGTACACCACCACCGACGACGGCGACGAGGAATCTATGAGCAGGATGTT CATGTCCGGATTGTCGATCGAGAGCTTCGACGCCGATGCAGAAGACAACGATGACGACAAAGGGAAGAAGAGCTTCGACCTGATTTCGTCTGAGGATTTC GATTCCGACAAAGATCCTGCAAGCTGCCGCTCCCTCCCTGTTACTCCTCCGCGGCGGCGGAGGAATCGAGGGGAACGAGGAGGAGTCGCCGTAGCAGGGT CTTTGATTGCGGCGGCGGTGAAGCAGTTCGCTAGCGAGAACGAAGGAGGAGGAGCGAAGTCAGAGAGAAATTGGAGGCGGCGGCGGTTAACTAGTGATCA GAGAATCGGCGGAAGAAGATTTTTCACCGATTACGGAAACGGTTGGAGCGGAGAGAGCGAGAACGGCGGCGCAGGAGGGATGGTGGTTATTACACGGCCG AAAGGAGGGAACCGATCTCTGTGTATGGATTTGGGAGAAGTGAAGGCTTGTAAAGATTTAGGGTTCGAGCTAGAGCACGAACGGATGGTTGAGGTTCCCG GTCGGGTCTCTGTTTCCGGTACCAGCAGCGGCGGCGATTCTCCTATCGCAAACTGGCGGATTTCTAGTCCCGGGGATGACCCGCGGGACGTGAAGGCTCG CCTCAAAATGTGGGCACAAGCCGTGGCCCTGGTTTCGACCGCGAATCATAGCTCGAATTTTCACTAA
AA sequence Show only first row Show all	>Lus10038023 pacid=23163827 polypeptide=Lus10038023 locus=Lus10038023.g ID=Lus10038023.BGIv1.0 annot-version=v1.0 MASDETSAVLSPPVHDDFDHYHDHDDGYDLHHSHPHSSHNLSRLSVCTSSMYTTTDDGDEESMSRMFMSGLSIESFDADAEDNDDDKGKKSFDLISSEDF DSDKDPASCRSLPVTPPRRRRNRGERGGVAVAGSLIAAAVKQFASENEGGGAKSERNWRRRRLTSDQRIGGRRFFTDYGNGWSGESENGGAGGMVVITRP KGGNRSLCMDLGEVKACKDLGFELEHERMVEVPGRVSVSGTSSGGDSPIANWRISSPGDDPRDVKARLKMWAQAVALVSTANHSSNFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46940			unknown protein		Lus10038023 [exp]	0	1
AT3G52105			unknown protein		Lus10029521 [exp]	1.4	0.8476
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10010907 [exp]	4.2	0.8569
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	12.8	0.7720
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10016311 [exp]	16.5	0.7107
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	16.7	0.7395
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	22.8	0.8038
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10013558 [exp]	27.9	0.7518
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10042348 [exp]	33.4	0.7962
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	38.9	0.7317
					Lus10018519 [exp]	43.8	0.6800

Compare expression of checked genes

Lus10038023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.