Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62060 608 / 0 Pectinacetylesterase family protein (.1) AT2G46930 593 / 0 Pectinacetylesterase family protein (.1) AT5G26670 577 / 0 Pectinacetylesterase family protein (.1.2) AT3G05910 575 / 0 Pectinacetylesterase family protein (.1.2) AT1G57590 547 / 0 Pectinacetylesterase family protein (.1) AT4G19420 445 / 1e-155 Pectinacetylesterase family protein (.1.2) AT1G09550 424 / 9e-148 Pectinacetylesterase family protein (.1) AT5G23870 419 / 4e-145 Pectinacetylesterase family protein (.1.2.3) AT3G09410 411 / 6e-142 Pectinacetylesterase family protein (.1.3) AT5G45280 382 / 3e-131 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009966 [exp] 776 / 0 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 632 / 0 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10010084 [exp] 539 / 0 AT5G26670 491 / 9e-174 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 427 / 3e-148 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 426 / 6e-148 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10039238 [exp] 407 / 6e-141 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10033301 [exp] 406 / 2e-140 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 406 / 3e-140 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10024398 [exp] 400 / 3e-137 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110900 [exp] 621 / 0 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.013G000900 [exp] 599 / 0 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 591 / 0 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 556 / 0 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 429 / 5e-149 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 429 / 7e-149 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.015G145400 [exp] 414 / 9e-144 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.012G142300 [exp] 405 / 3e-140 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G233900 [exp] 405 / 5e-140 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 395 / 4e-136 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10038024 pacid=23163811 polypeptide=Lus10038024 locus=Lus10038024.g ID=Lus10038024.BGIv1.0 annot-version=v1.0 ATGGAGTCGAAGAACCACCTGCTATGCCTCCGTTACTTCACCATTGCTATCATTTTCTCGGCAGCTACCACCACCACCAGATCTGATTCCACCGCCGCCG ATTCACCGTCAGCTCTATCCAAACCTCTCATGGTTCCCCTCACTCTGATTCAAGGAGCTGATTCCAAAGGAGCTGTTTGTTTAGATGGGACGCTGCCCGG CTACCATATCCATAGAGGGTCTGGAATTGGTGCAAACAGTTGGCTCATTCAGTTGGAGGGAGGTGGATGGTGCAACTCTGTGAAGAATTGTATATACAGG AAAACTACACGGCGTGGTTCCTCCAAATACATGGAGAAGGTTATACCATTCACTGGAATCTTGAGTGAAAAACCTGAAGAAAACCCTGATTTCTTCAACT GGAACAGGATCAAGTTACGTTACTGTGATGGTGCGTCTTTCAATGGCGATAGCCAGAACGAGGCTGCACAGCTCTACTTTCGAGGACAACGAATCTGGTC CGTAGCCATGGAACAGTTTATGTCCCTCGGAATGAAGTCTGCAAACCAGGCTCTTCTATCTGGTTGCTCTGCTGGAGGGCTGGCATCAATTTTGCACTGT GATGAGTTCAGTGCCATGTTCACTCAATCCACCAAAGTCAAATGCTTAAGCGATGCCGGCATGTTCCTAAACGCAAAGGATGTATCTGGGGGAAACACCC TCCAAGCATTCTATAATGGAGTTGTTAGCACACAGCAACTGCAGAGGGACCTGCCAAGTTCTTGCACCAACCATCTGGATCCTACTTCTTGCTTCTTCCC CCAAAATTTGGTTGACAACATCCAGACCCCCATGTTTTTACTCAATGCAGCCTACGATGCATGGCAGATTCAAGCTAGTTTAGCTCCACCATCAGCGGAT CCTAATGGCCAGTGGGATGGCTGCAAAAAGAACCATTTACAGTGTAACTCAACACAGATCAACTTCTTTCAAGATTTCAGGAACCAAATGCTGAATGCAG TGAAGGGTTTCTCCAACTCCCAACGGAACGGGCTGTTCATAAATTCGTGCTTTGCACATTGCCAAACCGAAAGGCAGGATACATGGTTTGCTGATGATTC TCCTGTATTGAACAAGAAGACGGTTGCACAATCAGTGGGAGACTGGTACTTCGATCGAGTTGGCGTCAGGGCTATCGACTGTCCGTATCCCTGCGACAAC TCCTGCCATAATCTAGTATTCAAGTGA
AA sequence Show only first row Show all	>Lus10038024 pacid=23163811 polypeptide=Lus10038024 locus=Lus10038024.g ID=Lus10038024.BGIv1.0 annot-version=v1.0 MESKNHLLCLRYFTIAIIFSAATTTTRSDSTAADSPSALSKPLMVPLTLIQGADSKGAVCLDGTLPGYHIHRGSGIGANSWLIQLEGGGWCNSVKNCIYR KTTRRGSSKYMEKVIPFTGILSEKPEENPDFFNWNRIKLRYCDGASFNGDSQNEAAQLYFRGQRIWSVAMEQFMSLGMKSANQALLSGCSAGGLASILHC DEFSAMFTQSTKVKCLSDAGMFLNAKDVSGGNTLQAFYNGVVSTQQLQRDLPSSCTNHLDPTSCFFPQNLVDNIQTPMFLLNAAYDAWQIQASLAPPSAD PNGQWDGCKKNHLQCNSTQINFFQDFRNQMLNAVKGFSNSQRNGLFINSCFAHCQTERQDTWFADDSPVLNKKTVAQSVGDWYFDRVGVRAIDCPYPCDN SCHNLVFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	0	1
AT5G60750			CAAX amino terminal protease f...		Lus10017536 [exp]	1.4	0.8719
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	2.4	0.8716
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	5.3	0.8635
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	6.7	0.8625
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	7.5	0.8551
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	9.6	0.8652
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	11.2	0.8335
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	11.7	0.8518
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	12.7	0.8581
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	13.2	0.8194

Compare expression of checked genes

Lus10038024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.