Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01700 402 / 7e-143 Chitinase family protein (.1) AT1G02360 398 / 2e-141 Chitinase family protein (.1) AT3G12500 309 / 2e-105 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT3G16920 174 / 2e-52 ATCTL2 chitinase-like protein 2 (.1) AT2G43590 169 / 1e-51 Chitinase family protein (.1) AT1G05850 171 / 2e-51 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G54420 164 / 3e-49 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 147 / 6e-43 Chitinase family protein (.1) AT2G43610 141 / 1e-40 Chitinase family protein (.1) AT2G43620 140 / 4e-40 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009968 [exp] 509 / 0 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10041830 [exp] 275 / 3e-92 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 266 / 2e-88 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10035625 [exp] 175 / 3e-53 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10000453 [exp] 171 / 3e-52 AT3G54420 382 / 3e-135 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035621 [exp] 175 / 5e-52 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003226 [exp] 172 / 1e-51 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10041278 [exp] 171 / 2e-51 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037430 [exp] 171 / 2e-51 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186500 [exp] 418 / 3e-149 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.014G111800 [exp] 412 / 9e-147 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182000 [exp] 303 / 3e-103 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 300 / 7e-102 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 287 / 6e-98 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 256 / 9e-85 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 249 / 1e-81 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 238 / 9e-78 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 219 / 8e-70 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.010G141600 [exp] 181 / 2e-55 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10038026 pacid=23163779 polypeptide=Lus10038026 locus=Lus10038026.g ID=Lus10038026.BGIv1.0 annot-version=v1.0 ATGGCGCTCATTCCGCCGCCACTCGCCGTCCTCATAACAATCGCCCTCACCCTCTTCTCCTTCGCCGAATCGGCTCAAGACCTGTCGTTAAAATCCTCCT CCTATCTTCTCAGTAAAGACCTCTACAACTCCATCTTCCTCCACAAGGACGACTCTGCCTGCCCGGGGAAGGACTTCTACACCTATGAGTCCTTTGTCCG AGCTGCCCGTTACTTCCCCAAGTTCGGAACTACAGGCAGCCGTGTCACCCGGCGGAGGGAGGTGGCCGCGTTCCTGGCCCAGATATCCCACGAGACCACG GGCGGGTGGGCCACTGCTCCCGATGGACCCTACTCGTGGGGGCTTTGCTTTAAAGAGGAAGTTAGCCCACAGGGAAACTATTGCGATGCTACTAATACCC AGTGGCCATGTGTTCCTGGCAAGTCCTACAAAGGAAGAGGACCCATCCAATTGTCTTGGAACTACAACTACGGGCAAGCAGGGAAGGCACTTGGATTTGA CGGCCTAAACAACCCAGAAATCGTGGCCAATAACTCAGCGATCGCATTTAAGACCGCACTTTGGTTTTGGATGACGGAGCAGAGTCCCAAGCCTTCGTGC CACAACGTGATGGTTGGTAAGTACAGGCTCCGAGGGGCCGATTTAGCTGCAAACCGAACCATTGGATTTGGTTTGGTCACCAATATAATCAATGGCGGTC TGGAATGTGGGCTGCCCAACGATGCTCGGGTCAACAGTCGGATCGGGTTTTTCCGAAGATATGCTGGATTGTTTAATGTGGATACCGGGCCCAATTTGGA TTGTGAGAATCAGAAGCCCTTTTAG
AA sequence Show only first row Show all	>Lus10038026 pacid=23163779 polypeptide=Lus10038026 locus=Lus10038026.g ID=Lus10038026.BGIv1.0 annot-version=v1.0 MALIPPPLAVLITIALTLFSFAESAQDLSLKSSSYLLSKDLYNSIFLHKDDSACPGKDFYTYESFVRAARYFPKFGTTGSRVTRRREVAAFLAQISHETT GGWATAPDGPYSWGLCFKEEVSPQGNYCDATNTQWPCVPGKSYKGRGPIQLSWNYNYGQAGKALGFDGLNNPEIVANNSAIAFKTALWFWMTEQSPKPSC HNVMVGKYRLRGADLAANRTIGFGLVTNIINGGLECGLPNDARVNSRIGFFRRYAGLFNVDTGPNLDCENQKPF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02360			Chitinase family protein (.1)		Lus10038026 [exp]	0	1
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	3.6	0.9067
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	4.7	0.9047
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10038013 [exp]	11.5	0.8931
AT2G35360			ubiquitin family protein (.1)		Lus10004553 [exp]	12.6	0.8708
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10016769 [exp]	12.8	0.8984
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10022463 [exp]	27.7	0.8915
AT5G25940			early nodulin-related (.1)		Lus10002236 [exp]	42.5	0.8661
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	43.0	0.8798
AT1G65300	MADS	AGL38, PHE2	PHERES2, AGAMOUS-like 38 (.1)		Lus10022325 [exp]	43.4	0.8826
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	52.4	0.8505

Compare expression of checked genes

Lus10038026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.