Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04450 196 / 5e-57 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G62300 174 / 2e-48 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G01720 172 / 3e-48 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT4G22070 172 / 7e-48 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G68150 143 / 2e-38 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 136 / 3e-35 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 136 / 8e-35 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G69810 115 / 2e-28 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G31800 99 / 4e-23 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G25000 92 / 8e-21 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009969 [exp] 194 / 1e-59 AT4G04450 166 / 8e-49 WRKY family transcription factor (.1) Lus10015546 [exp] 171 / 4e-49 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10035286 [exp] 170 / 6e-47 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10021554 [exp] 164 / 1e-44 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10022959 [exp] 164 / 1e-44 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10023615 [exp] 139 / 1e-35 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 138 / 4e-35 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10035971 [exp] 129 / 5e-33 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10016682 [exp] 129 / 1e-32 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111900 [exp] 243 / 9e-75 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 226 / 2e-68 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.002G228400 [exp] 204 / 4e-59 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.014G155100 [exp] 199 / 3e-57 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.004G007500 [exp] 197 / 1e-56 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.011G007800 [exp] 169 / 1e-46 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.017G079500 [exp] 149 / 2e-39 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.015G064100 [exp] 148 / 1e-38 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 135 / 2e-34 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.018G019800 [exp] 102 / 5e-24 AT1G80840 263 / 7e-87 WRKY DNA-binding protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10038028 pacid=23163657 polypeptide=Lus10038028 locus=Lus10038028.g ID=Lus10038028.BGIv1.0 annot-version=v1.0 ATGAACAGCCTCAACGATGACCACGAGGATTGTCGAGAAATGAATCACGACGGTGGCACCAGAAGCAGGTCATCGCCGATTAACACTGGACTTAATCTGC TGCTTGCGACCAGTTCTCCTCATAATGATAGCAACGACGAGGTGAAAGTACTGAAAGTGGAGGTGGAGAGGATGAAAGAAGAGAACAAGAGGCTGAAGGG GATGGTGGATCATATTCTGCAGAGCTACAAACATCTGCAATCCCACCTCATGATCATGGCTATCAACAATAAACGTCCGGGCGAACAGAGTACTCCCACA GTGCCACCATCATATAACGAGTTCATGGATCCACAACTACTAACGCCGCCCGCTGTCGTCGCACTTCCACCGCCCAACGAGAAGACCGCTAAATACGACC GTACTCCGATGGAGGAGGATTATATAATTAATAGCCATGGTGATCAGGCTTCCCAAAGTTGGGTCGACGGATCTCCTCACAAAATCCCAAAGCTAGAGCC GCCGCCTCCCCGCCGCCGGGTGGACGATGACCAAGCCGCCGGTGAGGCGCCTTTCCGGAAGGCTAGAGTGTCTGTTCGAGCAAGATCGGAGGCTCCATCG ATAAGCGACGGATGCCAATGGAGGAAATACGGGCAGAAGATGGCTAAGGGAAATCCTTGTCCTCGTGCTTACTATCGTTGCACCATGGCTGTTGCATGCC CAGTTCGCAAGCAGGTGCAAAGAAGCGCGGAGGACAAGAGCATCCTGATAACAACCTACGAAGGCAACCACAAACACCCTCTCCCTCCCGCCGCTACCGC TATGGCCGCCACCACCTCTGCTGCCGCCGCCATGCCCCTCTCCGGTTCCACCACCACCACTCCAAATCACCATCACAAATACTTTCCATTCTCCTCCCCA CACTTTCCATTCCCCTCCTCCAGCTTCCTCCCTCGTCATCATTTCCCTTACTCCCCCCCCGCCACCTTATCCGCCTCTGCACCTTTCCCAACCATAACCC TTGATCTCACCAACTCCCCGCCGCCGCCGCAACTGGTGGGCCACCCCTTGTATAATAATAATAATAATAAATTTATCATGCCTTTCGTTGACCCTACACG GGGTAGTGACGGCGGGTCGACGATGATGGATACTATGACTGCTGCCATTGCTTCTGACCCGAATTTTACGGCGGGGGGGGCGGGGGTGTGGGGCGGATGC ACCGGGGGGGGGGTGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNACCGGGGTCCACGGCGGCTGTTTTGCCTGGGTCGCCACAACTTCCGCAGTCTTGC ACTACTTTCTCCACCAACTGATATGTGTGTAA
AA sequence Show only first row Show all	>Lus10038028 pacid=23163657 polypeptide=Lus10038028 locus=Lus10038028.g ID=Lus10038028.BGIv1.0 annot-version=v1.0 MNSLNDDHEDCREMNHDGGTRSRSSPINTGLNLLLATSSPHNDSNDEVKVLKVEVERMKEENKRLKGMVDHILQSYKHLQSHLMIMAINNKRPGEQSTPT VPPSYNEFMDPQLLTPPAVVALPPPNEKTAKYDRTPMEEDYIINSHGDQASQSWVDGSPHKIPKLEPPPPRRRVDDDQAAGEAPFRKARVSVRARSEAPS ISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVACPVRKQVQRSAEDKSILITTYEGNHKHPLPPAATAMAATTSAAAAMPLSGSTTTTPNHHHKYFPFSSP HFPFPSSSFLPRHHFPYSPPATLSASAPFPTITLDLTNSPPPPQLVGHPLYNNNNNKFIMPFVDPTRGSDGGSTMMDTMTAAIASDPNFTAGGAGVWGGC TGGGVRGXXXXXXXXTGVHGGCFAWVATTSAVLHYFLHQLICV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	0	1
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	1.7	0.9364
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	5.5	0.9266
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10027802 [exp]	6.7	0.8968
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	8.3	0.9230
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	13.4	0.8751
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	15.2	0.8979
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	16.4	0.9012
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	16.5	0.8867
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	18.0	0.8924
					Lus10020249 [exp]	18.7	0.8806

Compare expression of checked genes

Lus10038028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.