Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01730 466 / 7e-161 DHHC-type zinc finger family protein (.1) AT3G22180 194 / 2e-54 DHHC-type zinc finger family protein (.1) AT4G15080 181 / 2e-49 DHHC-type zinc finger family protein (.1) AT2G33640 157 / 1e-41 DHHC-type zinc finger family protein (.1) AT1G69420 156 / 3e-41 DHHC-type zinc finger family protein (.1.2) AT3G56930 66 / 3e-11 DHHC-type zinc finger family protein (.1.2) AT3G26935 66 / 3e-11 DHHC-type zinc finger family protein (.1) AT3G09320 64 / 6e-11 DHHC-type zinc finger family protein (.1) AT3G04970 64 / 6e-11 DHHC-type zinc finger family protein (.1.2) AT3G48760 63 / 3e-10 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009971 [exp] 721 / 0 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 201 / 2e-56 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 195 / 2e-54 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10026632 [exp] 185 / 4e-52 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 167 / 2e-45 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 164 / 1e-44 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 165 / 3e-44 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10016036 [exp] 155 / 1e-40 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 139 / 3e-35 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112000 [exp] 549 / 0 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 536 / 0 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 207 / 2e-59 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 188 / 8e-56 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 196 / 1e-54 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 187 / 2e-51 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 172 / 7e-47 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 171 / 4e-46 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.005G041000 [exp] 66 / 2e-11 AT3G04970 520 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 64 / 1e-10 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038029 pacid=23163909 polypeptide=Lus10038029 locus=Lus10038029.g ID=Lus10038029.BGIv1.0 annot-version=v1.0 ATGATTGCACTAACTGCGAGACGCCATGGCTGGCAGCGCCCCCTCCACCCTCTCCAGATTGTGGGAATGGCTATCTACAGTTTCCTAGTCGTAGCCTTCT ACTCTTTCCTGGGACTCTTCCTCGGGAACAGAGTCGCCGAAATCACCGTCACAACCCTCTTTACAACCGCGGCGGTTTTGGTTATGTTCCTATTTATAAG ATGCACGGCAATCGACCCGAGCGACAGAACCAGCGAGAAGAAGAAGAAGAAGAACCAGCCTAGACCGAAAGGCGGCCGAGGGATGTCGAATTTGAGGTTC GGGTTGATTTTTCGGGAGATGGTGAAGAGAGTGTTCAGGAGGATGGAGAGGAAGATTCTGAGGACGTTCATAAGAAGGAAGTACTACTTGGATCCGTTGA AGGTGGCGGCGAATCAGATGGAGCCCTTGCTTCCTTTCCCACTTGTGATGAAGGAGGATGATTCTGCTGTTTCCCCTGACATCAAACCTGAGGACATCTC TTTCTGCTCCTTGTGCGATTTCGAGGTGAAGAAACACAGCAAGCATTGCAGGACTTGTAACAGGTGTGTTGAAGGATTCGACCACCATTGCAGGTGGCTG AACAACTGCGTTGGAAAAAGGAACTACACTACATTCTTCCTGCTCATGACATTTATTATGTTAATGTTAATTATAGAAGGAGGGACAGCAATTGCCATAT TCATCAGATGCTTCACTGACAAGAAAGGCATAGAAATGGAGCTCGAGACTAGGCTGCATTTGGAGTTTCCAAGACCTGTCCTTGCCACCATTGCGGTGCT GATGATGTTGATGACAGTTTATAGCTGTGCAGCCATGGGTCAACTCTTCTTCTTTCATGTGGTACTTATCCGCAAGGGGATGAGAACTTATGACTATATC CTGGCTATGAGAGGGGTGACTGAATCACTGGATCTCGAAGACGAAGAAGAAGAAGAAGAAGATGATCCATTTGATGATTCGGATTTCTCTTCAGATTCTG ATTGTGATTCTCCCAAGAAGATGTACAATTGCAAGTCCATCTGTGGACAACATCAACAGAACTCAAGAAGGTTGTCCATCAGAATAGACACAGTTCCTGA TCCTACTTCCGACTCAAACACCAAAAAGCAAGGCTTCCACGTAAGCATCAATCCATGGAAGCTACTTAAAATGAGCAGAGAAAAGGCTGTCCTTGAAGCT GAGAAAGCCAAAGAAAGGCTCAGGAATCAAAACCCAGTAGTGGAACAACAACAAGAAGATTCCTTGAGGCCATTATCACTGGAGACCAGATGTGGTCCAT CCATGAACGCCAATGCTAGGGGAACCACGATTGCCACATCATCGCCACGAAAGTTTTCGAGTCCCAGAAGGCGGTTTTCTTCGGGGTCTCCAGCGAGGAT TGTTCCATCTCCGAGGCAGAAGAAATACAGAAGCAGCTTTGACTTGAAGCTGACTGATGTTTCCAAGGAGCTGGAAACCTATATTTCCAAACAGGTTTTG TGTTCTGTAATTAAGAAAGATGCTTCTGATGCATCTTCTCCAAGATCTTGA
AA sequence Show only first row Show all	>Lus10038029 pacid=23163909 polypeptide=Lus10038029 locus=Lus10038029.g ID=Lus10038029.BGIv1.0 annot-version=v1.0 MIALTARRHGWQRPLHPLQIVGMAIYSFLVVAFYSFLGLFLGNRVAEITVTTLFTTAAVLVMFLFIRCTAIDPSDRTSEKKKKKNQPRPKGGRGMSNLRF GLIFREMVKRVFRRMERKILRTFIRRKYYLDPLKVAANQMEPLLPFPLVMKEDDSAVSPDIKPEDISFCSLCDFEVKKHSKHCRTCNRCVEGFDHHCRWL NNCVGKRNYTTFFLLMTFIMLMLIIEGGTAIAIFIRCFTDKKGIEMELETRLHLEFPRPVLATIAVLMMLMTVYSCAAMGQLFFFHVVLIRKGMRTYDYI LAMRGVTESLDLEDEEEEEEDDPFDDSDFSSDSDCDSPKKMYNCKSICGQHQQNSRRLSIRIDTVPDPTSDSNTKKQGFHVSINPWKLLKMSREKAVLEA EKAKERLRNQNPVVEQQQEDSLRPLSLETRCGPSMNANARGTTIATSSPRKFSSPRRRFSSGSPARIVPSPRQKKYRSSFDLKLTDVSKELETYISKQVL CSVIKKDASDASSPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	0	1
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	1.4	0.9807
AT5G42330			unknown protein		Lus10030749 [exp]	2.0	0.9680
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	3.5	0.9676
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	5.0	0.9664
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	6.0	0.9677
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	6.6	0.9583
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	7.7	0.9641
AT3G58650			unknown protein		Lus10016854 [exp]	8.0	0.9551
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	8.5	0.9567
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	9.2	0.9632

Compare expression of checked genes

Lus10038029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.