Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62110 618 / 0 Pectin lyase-like superfamily protein (.1) AT4G23820 455 / 5e-158 Pectin lyase-like superfamily protein (.1) AT3G16850 446 / 2e-154 Pectin lyase-like superfamily protein (.1) AT3G48950 445 / 1e-153 Pectin lyase-like superfamily protein (.1) AT3G61490 444 / 3e-153 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 440 / 3e-151 Pectin lyase-like superfamily protein (.1) AT4G33440 436 / 6e-150 Pectin lyase-like superfamily protein (.1) AT5G41870 432 / 5e-149 Pectin lyase-like superfamily protein (.1) AT2G23900 417 / 2e-142 Pectin lyase-like superfamily protein (.1) AT5G49215 414 / 1e-141 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009972 [exp] 627 / 0 AT3G62110 446 / 2e-156 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 458 / 7e-159 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037714 [exp] 453 / 7e-157 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 453 / 1e-156 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 446 / 1e-153 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 443 / 1e-152 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10032374 [exp] 442 / 1e-152 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 433 / 1e-148 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 429 / 1e-147 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G186900 [exp] 683 / 0 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 666 / 0 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 474 / 2e-165 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 464 / 7e-161 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 460 / 7e-160 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 460 / 1e-159 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.005G063400 [exp] 455 / 2e-157 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 454 / 1e-156 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 451 / 5e-156 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 447 / 1e-154 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10038030 pacid=23163812 polypeptide=Lus10038030 locus=Lus10038030.g ID=Lus10038030.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAAGTGAAGGAGGAACAACAAGAGGGTGTGCTTCTGGTACTTGCATTACTCTTCTCCAGTGCTGTTAATGGTGGCAGCCCTTATTGCAGAA GAGCGATTCCGGATGTAATCCGGCCACACAGTGTCACCATTACTGAGTTTGGTGCAGTTGGAGATGGGGTGACACTGAACACCAAGGCTTTCCAGAATGC CATCTTCTATCTCAATTCCTTTGCTGACAAAGGTGGAGCCAAGCTTTATGTACCCTCCGGGCGGTGGTTGACTGGCAGTTTTGATCTCATTAGCCATTTG ACTATATGGCTGGATGAAGATGCTGTCATTCTTGGATCAAAGGACTCTGGTGATTGGCCTGTGGTCGAACCGCTTCCATCGTACGGGCGAGGGAGGGAGT TGCCTGGTAAACGGTATCGTAGCCTCATATATGGCTCGAACTTGACCGATGTCATTATAACAGGCAACAATGGAACCATTGATGGTCAAGGAGATGTTTG GTGGAATTGGTTCCATAACAAGACCCTTAACTACACTCGCCCTCACTTAGTCGAGCTGATTAATTCGACCGATGTGATCATCTCGAACTTGACTTTCCAA AATTCGCCTTTCTGGACAATTCATCCTGTTTATTGCAGCCAAGTTATTGTTCAAAATGTCACAATACTTGCTCCCCTGGATTCACCAAACACTGATGGGG TTGATCCAGATTCTTCAGACGATGTTTGTATCGAGGACTGTTACATTAGTACCGGTGACGATCTGATAGCCATCAAAAGCGGCTGGGGCGGGTATGGTAC ATCGTTCGGCCGACCCAGTAAGAACATTACCATTATTCGTCTTGTTGGACGGAGTCGATCGAGTGCAGGAATCGCGATCGGGAGCGAGATGTCCGGAGGT GTATCGGAGGTTTACGCGCAAGATCTCCGCTTTTTCGGTACCAACTCGGCCATAAGGATCAAGACTTCTCCCGGAAGGGGAGGCTATGTCAGGAACATCC ACATATCAAATATCACCTTAACCGATGTGAACGTTACAATAAGGTTGACCGGTCAATACGGGGAGCATCCGGATGAGTCCTACGATCCGAGCGCCTTACC TTCAATTGAGAAAATCACGATCGAGAACGTCAGTGGAGTGAACATTACACACGCAGGAGTTCTGGAGGGGATCGAAGGAGACCCGTTTCTCGACATTTGC CTGTTGAATATCACCCTAATGGGTGTTGCGTCAAAGCCTGCGTGGGAATGCACTCACATTGCGGGATATTCGGATAAGGTTACCCCAAAAACTTGTAAGC TTCTCCGGGAGGAAATCTTCCCCGATCATTCGTCCGATTGCTATCATGTGTCCTCTCAAATGCAGAACTCGAGTAGTCTAAGTAGAGGGAAGAAGCAGTG GTTTTCTTGGTAA
AA sequence Show only first row Show all	>Lus10038030 pacid=23163812 polypeptide=Lus10038030 locus=Lus10038030.g ID=Lus10038030.BGIv1.0 annot-version=v1.0 MEKQVKEEQQEGVLLVLALLFSSAVNGGSPYCRRAIPDVIRPHSVTITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLYVPSGRWLTGSFDLISHL TIWLDEDAVILGSKDSGDWPVVEPLPSYGRGRELPGKRYRSLIYGSNLTDVIITGNNGTIDGQGDVWWNWFHNKTLNYTRPHLVELINSTDVIISNLTFQ NSPFWTIHPVYCSQVIVQNVTILAPLDSPNTDGVDPDSSDDVCIEDCYISTGDDLIAIKSGWGGYGTSFGRPSKNITIIRLVGRSRSSAGIAIGSEMSGG VSEVYAQDLRFFGTNSAIRIKTSPGRGGYVRNIHISNITLTDVNVTIRLTGQYGEHPDESYDPSALPSIEKITIENVSGVNITHAGVLEGIEGDPFLDIC LLNITLMGVASKPAWECTHIAGYSDKVTPKTCKLLREEIFPDHSSDCYHVSSQMQNSSSLSRGKKQWFSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	0	1
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	1.0	0.9368
AT3G12110		ACT11	actin-11 (.1)		Lus10021057 [exp]	1.7	0.9096
AT1G16860			Ubiquitin-specific protease fa...		Lus10034825 [exp]	2.0	0.9118
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	2.4	0.9035
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10000903 [exp]	3.2	0.9040
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	3.3	0.8729
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	5.3	0.9061
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	9.4	0.8575
AT1G16860			Ubiquitin-specific protease fa...		Lus10033374 [exp]	10.0	0.8729
AT3G12110		ACT11	actin-11 (.1)		Lus10004169 [exp]	10.9	0.8661

Compare expression of checked genes

Lus10038030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.