Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01800 1471 / 0 AtcpSecA, AGY1, SECA1 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) AT1G21650 564 / 0 SECA2 Preprotein translocase SecA family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009973 [exp] 1781 / 0 AT4G01800 1589 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) Lus10029715 [exp] 563 / 0 AT1G21650 1660 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10042747 [exp] 553 / 0 AT1G21650 1587 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112266 [exp] 1543 / 0 AT4G01800 1707 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) Potri.002G078000 [exp] 569 / 0 AT1G21650 1753 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07517 [flax] [poplar] SecA_DEAD SecA DEAD-like domain CL0023 [flax] [poplar] PF01043 [flax] [poplar] SecA_PP_bind SecA preprotein cross-linking domain CL0023 [flax] [poplar] PF07516 [flax] [poplar] SecA_SW SecA Wing and Scaffold domain
Representative CDS sequence Show only first row Show all	>Lus10038031 pacid=23163791 polypeptide=Lus10038031 locus=Lus10038031.g ID=Lus10038031.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCACTGCTCCGCGACTCGTCGATGGCGAACCGCTTCCATTCATCATCTTCAACCTCGACATCTTCTCTTCTTCTCCACCACGATCACATTC CCCAATCCTTCTTCGGCTCCCCGCCGCTTAAGTTCTTATTCAACTCCGGTCAGAGATCAAGAGCTAGGGTTTGCGGCGGGAGAAGGACCAGGATGATCGT TCGTCCACTGGCGGCTTCTCTGACTGGTTTCCTTGGCGGGATTTTCAAAGGGACTGATACAGGGGAATCCACCAGGCAGCAATATAGTCAAACTGTGGGA CTGGTTAATCGGTTGGAGTCGGAGATTTCTTCGCTATCTGATTCGGAATTGCGTGATAGGACTTCGGGGCTGAAGCAGCGTGCTCAGCAGGGCGAGTCCT TGGACTCTCTCCTGCCCGAAGCATTTGCGTTGGTTAGAGAAGCTTCTAAAAGAGTTCTAGGTCTCCGTCCATTTGATGTCCAGCTCATTGGTGGAATGGT TCTTCACAAGGGCGAAATAGCTGAAATGAAGACTGGAGAAGGGAAGACGCTTGTTGCTATTTTGCCAGCGGTTTTGAATGCCTTGAGTGGGAAAGGAGTT CATGTTGTTACTGTTAACGATTACTTGGCTCGCAGAGATTGTGAATGGGTTGGTCAAGTTCCTCGTTTCCTTGGACTCAAGAGTGTTGAAGAGCTGGTCC TTAGAAGGTTTAATTACTGTGTAATCGATGAAGTTGATTCCATCCTTATTGATGAAGCAAGGACTCCTCTCATCATATCTGGACCTGCAGAGAAACCTAG TGATCGTTATTACAAAGCTGCAAAGATCGCTACAGCATTTGAAAAAGATATCCATTACACTGTTGATGAGAAGCAGAAAAATGTTCTTCTCACCGAACAA GGTTATGAGGACTCTGAAGAAATTTTGAATCTTAAAGATCTGTATGATCCTCGTGAACAATGGGCGATGTACATATTGAACGCCATAAAAGCAAAAGAGC TATTTCTTAGAGATGTGAATTACATTGTGCGAGGCAAGGAGGTGTTTATTGTTGATGAATTTACAGGTCGAGTTATGCAGGGTAGAAGATGGAGTGATGG ACTTCACCAAGCAGTTGAAGCAAAAGAAGGGCTGCCAATTCAAAACGAGACTATAACATTGGCATCAATCAGTTACCAGAACTTTTTCCTTCAGTTCCCA AAACTGTGCGGGATGACCGGCACAGCAGCTACTGAAAGCACTGAATTTGAGAGTATATACAAACTCAAAGTGACGATTGTGCCTACAAACAAACCCATGA TAAGAAAGGATGATTCTGATGTAGTATTTAGGGCAACTGTAGGAAAATGGCGAGCTGTCGTAGTAGAGATCTCAAGGATGCATAAAACAGGAAGACCAGT GCTTGTTGGTACAACAAGCGTGGAGCAGAGTGATGCATTATCTGGTCAGTTGCAAGAAGCTGGGATTCCTCATGAGGTTCTCAATGCAAAACCAGAGAAT GTTGAGAGAGAGGCTGAGATCGTAGCACAGAGTGGGCGCCTAGGAGCAGTAACGATTGCCACAAACATGGCAGGCCGTGGAACAGACATTATTCTTGGGG GAAATGCAGAATTTATGGCCAGACTAAAACTACGTGAGATGTTGATGCCAAGAGTTGTTGCACCGGCTGATGGAGGTTTTGTATCTGTGAAGAAAGCTTC TCCAAAGAAGTCGTGGAAGGTGAATGAAAATCTATTCCCATGCACACTGTCCGATGTGAATACCAAGTTGTCCGAGGAAGCAGTGCAGTTTGCTGCCAAG GCTTGGGGTCAAAGATCATTAACTGAGCTAGAAGCGGAGGAACGACTTTCTTATTCCTGTGAAAAGGGCCCGGTTCAAGATGAAGTTATAGCCAAGTTGC GCAAAGCCTTCCTTGAAATTGTGAAAGAATATAAGATATACACCGAGGAAGAAAGGAAGAAGGTCATATCAGCCGGCGGCCTACATGTGGTGGGCACAGA AAGGCACGAGTCTCGTAGAATTGACAATCAGCTCCGAGGACGAAGTGGTCGCCAAGGGGATCCAGGAAGCTCCCGCTTCTTCCTTAGCTTGGAGGATAAC ATCTTCAGAATTTTTGGCGGAGACCGCATCCAAGGCTTGATGAGGGCATTTAGAGTTGAAGACCTACCTATCGAATCTCAAATGCTAACAAAAGCACTGG ACGAAGCTCAGAGGAAAGTGGAGAACTATTTCTTCGACATCCGAAAGCAACTGTTCGAGTACGATGAAGTTCTCAATAGCCAAAGAGACCGCGCAAATAT CGGTTCTGATGCAGCTTCTGAAAGTTGGGATCTCGAAAAGCTGATCGCGAAAGTCCAGCAGTACTGCTATCTGTTGAATGACTTAACCCCAGATCTGCTA AGAAGCCAGTGTTCAAGCTATATCGAACTACGAGATTACCTGAGACTTCGAGGCCGGGAGGCTTATTTACAGAAAAGGGATACCGTGGAGGAAGAAGCAC CAGGACTAATGAAGGAAGCTGAAAGGTTCTTGATCCTGAACAACATCGATCGGCTATGGAAGGAACACCTACAATCAATCAAGTTCGTACAGCAAGCTGT GGGCCTTCGCGGATACGCTCAACGTGATCCGTTGATCGAGTATAAACTCGAAGGCTACAATCTCTTCTTGGATATGATGGCTCGGATCCGAAGAAACGTC ATCTACTCCATTTACCAGTTTAAGCCAGTGCTAGTGAAGAAAGATGAGAAGCCAACCGAGCTGGTGAACAACGGTAGAGGTGGTAAGAAAGATCGGGTCG GCGCTGCAGAGACATCTTCGTCTCCGGCAGCAAGTGCCTGA
AA sequence Show only first row Show all	>Lus10038031 pacid=23163791 polypeptide=Lus10038031 locus=Lus10038031.g ID=Lus10038031.BGIv1.0 annot-version=v1.0 MAAPLLRDSSMANRFHSSSSTSTSSLLLHHDHIPQSFFGSPPLKFLFNSGQRSRARVCGGRRTRMIVRPLAASLTGFLGGIFKGTDTGESTRQQYSQTVG LVNRLESEISSLSDSELRDRTSGLKQRAQQGESLDSLLPEAFALVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMKTGEGKTLVAILPAVLNALSGKGV HVVTVNDYLARRDCEWVGQVPRFLGLKSVEELVLRRFNYCVIDEVDSILIDEARTPLIISGPAEKPSDRYYKAAKIATAFEKDIHYTVDEKQKNVLLTEQ GYEDSEEILNLKDLYDPREQWAMYILNAIKAKELFLRDVNYIVRGKEVFIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETITLASISYQNFFLQFP KLCGMTGTAATESTEFESIYKLKVTIVPTNKPMIRKDDSDVVFRATVGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDALSGQLQEAGIPHEVLNAKPEN VEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRVVAPADGGFVSVKKASPKKSWKVNENLFPCTLSDVNTKLSEEAVQFAAK AWGQRSLTELEAEERLSYSCEKGPVQDEVIAKLRKAFLEIVKEYKIYTEEERKKVISAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN IFRIFGGDRIQGLMRAFRVEDLPIESQMLTKALDEAQRKVENYFFDIRKQLFEYDEVLNSQRDRANIGSDAASESWDLEKLIAKVQQYCYLLNDLTPDLL RSQCSSYIELRDYLRLRGREAYLQKRDTVEEEAPGLMKEAERFLILNNIDRLWKEHLQSIKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLDMMARIRRNV IYSIYQFKPVLVKKDEKPTELVNNGRGGKKDRVGAAETSSSPAASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	0	1
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	1.4	0.9489
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	2.0	0.9460
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	2.4	0.9437
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	4.5	0.9406
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	4.5	0.9208
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	4.9	0.9131
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	7.9	0.9092
AT2G23390			unknown protein		Lus10038137 [exp]	9.9	0.8995
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	10.2	0.9150
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	11.5	0.9035

Compare expression of checked genes

Lus10038031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.