Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62130 656 / 0 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G26600 567 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G08490 52 / 6e-07 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1) AT5G65720 42 / 0.001 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009974 [exp] 911 / 0 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031445 [exp] 554 / 0 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10001514 [exp] 551 / 0 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031670 [exp] 69 / 2e-12 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187200 [exp] 691 / 0 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G112700 [exp] 681 / 0 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G003000 [exp] 593 / 0 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.013G002400 [exp] 589 / 0 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.009G066000 [exp] 57 / 1e-08 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10038033 pacid=23163777 polypeptide=Lus10038033 locus=Lus10038033.g ID=Lus10038033.BGIv1.0 annot-version=v1.0 ATGGAAACCGAAGATCCACGGAACGGCGATTCCAATCACCACCTCGTGAATCCGATCAAGAAGAAGCCCCGGCTCCTCCCGCACGCTCGTTCCGCAACCG GGTCGTCGTCATCATCACCATCGCCATCGGTCGCCGACGAGTTCGCTCACCACGAACCAGGCATGGCGAGACTTAATAACGGGAGCTTCGGGAGCTGTCC AGGATCGGTACTCGCTTCGCAGAGGGATTGGCAGCTCAAGTTTCTCTGCCAGCCGGACGATTTCTACTTCAATACTCTCCGGCAAGGTATACTCCGCTCC CGCACTCTCGTTAAGGAGCTGGTGAACGCTGACGACGTCGAAGAGGTTTCGCTCATCGACAACGCGACCACGGGAGCGGCGATAGTGCTTCAGCAAATCG GCCGCGCATTCGCGGAAGGCAGGTTCGATAAGAACGACGCGGTGCTGATGTTCCACTGCGCTTTCCAAGCTGTGAAGAAGTCGATGGAGGCATATGTCCG GCGGGCGGGCGGCTCTGTAGTCGAGGTTCAATTGCCGTTTCCAGTACGGTCCGATGAGGAGATCATTTCGGAGTTTAGGAAGGGTTTGGAGAAGGCTAAA TCTAAAGGTAGGAAAGTAAGGTTAGCGATTATTGATCATATAACGTCGATGCCGTCTGTTGTGACTCCGTTGAGAGAGCTCGTTAGGATTTGCAGGGAAG AAGGAGTTGACCAAGTGTTCGTAGATGCTGCACATGCTATAGGCAGCGTTGAAGTTGACGTGAAGGAGATTGGGGCTGATTTCTACGTGAGTAATCTTCA CAAATGGTTTTTCTGCCCACCATCTGTTGCGTTTTTGTACTGCAAGAAATCAATTTCGTCATCTGATGCTCATCACCCAGTGGTCTCGCACGAATATGGC AATGGACTAGCAATCGAGAGTTCGTGGATTGGAACACGGGATTACAGCTCGCAGTTGGCTGTACCGGCAGCTTTAGAGTTTGTCAATTCGTTCGAGGGAG GGATTAGAGGGATTATGAAAAGGAACCATGATGCGGTTGTGAAGATGGGGGAAATGCTGGTCGAATCGTGGGGGACGAATTTCGGTGCTCCGCCTGAGAT GTGTGCATCCATGGTCATGGTAGGCTTGCCTTCAAGGTTGAATGTTACTAGTGATGATGATGCTTTGCGGTTAAGGTCGCATTTACGAGCTAATTGCGGG ATTGAGGTTCCTTTACACTATCAAGCTCCAAGAGACGGTGAGGAGGGTGTGAAGGATAATTATGGGATCATAACAGCCTATGTAAGGATTTCCCATCAAG TTTACAACACAGTGGACGAATATTACAAGCTCAGAGATGCGATAAATCAGACTGTCGAAGACAAGAGAACATGCAAGACTCTTCCAACAGAGTGA
AA sequence Show only first row Show all	>Lus10038033 pacid=23163777 polypeptide=Lus10038033 locus=Lus10038033.g ID=Lus10038033.BGIv1.0 annot-version=v1.0 METEDPRNGDSNHHLVNPIKKKPRLLPHARSATGSSSSSPSPSVADEFAHHEPGMARLNNGSFGSCPGSVLASQRDWQLKFLCQPDDFYFNTLRQGILRS RTLVKELVNADDVEEVSLIDNATTGAAIVLQQIGRAFAEGRFDKNDAVLMFHCAFQAVKKSMEAYVRRAGGSVVEVQLPFPVRSDEEIISEFRKGLEKAK SKGRKVRLAIIDHITSMPSVVTPLRELVRICREEGVDQVFVDAAHAIGSVEVDVKEIGADFYVSNLHKWFFCPPSVAFLYCKKSISSSDAHHPVVSHEYG NGLAIESSWIGTRDYSSQLAVPAALEFVNSFEGGIRGIMKRNHDAVVKMGEMLVESWGTNFGAPPEMCASMVMVGLPSRLNVTSDDDALRLRSHLRANCG IEVPLHYQAPRDGEEGVKDNYGIITAYVRISHQVYNTVDEYYKLRDAINQTVEDKRTCKTLPTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	0	1
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10009974 [exp]	1.0	0.8572
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	2.8	0.8463
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	3.0	0.7977
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	4.9	0.7648
AT2G30120			unknown protein		Lus10042267 [exp]	5.3	0.7648
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	6.3	0.7712
AT1G21840		UREF	urease accessory protein F (.1...		Lus10039022 [exp]	8.5	0.7633
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	9.8	0.7674
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	10.8	0.7937
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	10.8	0.7557

Compare expression of checked genes

Lus10038033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.