Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48300 81 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009975 [exp] 398 / 9e-140 AT1G48300 91 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003200 [exp] 92 / 4e-21 AT1G48300 125 / 2e-33 unknown protein Potri.002G187300 [exp] 91 / 1e-20 AT1G48300 98 / 2e-23 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF01257 [flax] [poplar] 2Fe-2S_thioredx Thioredoxin-like [2Fe-2S] ferredoxin
Representative CDS sequence Show only first row Show all	>Lus10038034 pacid=23163672 polypeptide=Lus10038034 locus=Lus10038034.g ID=Lus10038034.BGIv1.0 annot-version=v1.0 ATGGCTACGGCGCAAAGAATGATCGCTTCTGTTGGTGGCTCGACGGCCATCCGATTTTCCGACGGTGTGGATTCTCGCGCCTGTGATCGGACCGTCCGCG GAGTTGGATTTGGCGCGAGGGGATGGAAGGTCGGCGCGCTACGCCATGAGGAGGAATTCGCAGATTCCCAGCATATGCAGTACTACGTCTCGCCGCGGGC AGGATGCGAGGAGAAGAAGGCGAAGGAACTGAAAAAGGAGAAGAATAAGAAGAAGCTGAAGTTGTTGAAGAGACTTTCCGCCGATCTTCAGATGTTCGTT TCCGGGAGGGAGGAGGAGGAGGACGGCGGAGGAATGATTATCTCGGAAGCGCAGAAGGTTCTGCTTGCAGAGCTGGATAAGTTGAGATCCGAGGAGATGG AGAAGAAGAAGAAGAAGAAGAAAATGAAGGAGAGAGCTCTGATGAAATCGTCCGACTCTGAATCGTCGTCCTCGAGTTCATCGGAATCAAGCGACAGCGA TGATTGCGGGAACAACGTAATGGTGATGAAATCTCAGCGCAAGAGATCAAATTCGAATTACGTGATTCCACAAGAATCGAGCTTCATTGGAACTCTCCCG GCTATTGAAGTTCAAGCAGAAGAGGTGCGTGATTCCATCGTCTCCCTCGTCCGGTCTGGAATTTCCGCCGCCCCGGTACAGAGCAAGAGGAAGATCGAGG TTTGCATGGGAGGGAAGTGCAAGAAGCAGGGAGCAATGGCGTTGATGGAAGATTTCCAGAGGAAAGTAGGAGAAGAAGCAGAAGCCATGGTTGTCTCCTG CAAGTGTATGGGGAAATGCAAGAACGCCCCAAACGTTAGGGTTTCGTCTTCGTCATCCAGCGGCTTGGAAGATGGACTTCTGTGCATCGGGGTAGGGTTG GAAGATGTGGACGCCATTGTCGCTAAGCTGATGGCAAGTAGCAGTGACCATTACCTGCCAGTCATGGCGCCTTAA
AA sequence Show only first row Show all	>Lus10038034 pacid=23163672 polypeptide=Lus10038034 locus=Lus10038034.g ID=Lus10038034.BGIv1.0 annot-version=v1.0 MATAQRMIASVGGSTAIRFSDGVDSRACDRTVRGVGFGARGWKVGALRHEEEFADSQHMQYYVSPRAGCEEKKAKELKKEKNKKKLKLLKRLSADLQMFV SGREEEEDGGGMIISEAQKVLLAELDKLRSEEMEKKKKKKKMKERALMKSSDSESSSSSSSESSDSDDCGNNVMVMKSQRKRSNSNYVIPQESSFIGTLP AIEVQAEEVRDSIVSLVRSGISAAPVQSKRKIEVCMGGKCKKQGAMALMEDFQRKVGEEAEAMVVSCKCMGKCKNAPNVRVSSSSSSGLEDGLLCIGVGL EDVDAIVAKLMASSSDHYLPVMAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48300			unknown protein		Lus10038034 [exp]	0	1
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	2.0	0.9606
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	4.0	0.9495
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	4.1	0.9396
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	4.7	0.9601
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	5.7	0.9590
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	8.4	0.9533
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	9.8	0.9563
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	10.1	0.9515
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	10.9	0.9504
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	11.1	0.9208

Compare expression of checked genes

Lus10038034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.