Plant FIBer expression Database

Lus10038035 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62140 206 / 3e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009976
[exp]
370 / 2e-132 AT3G62140 223 / 3e-74 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G112900
[exp]
228 / 4e-76 AT3G62140 201 / 1e-65 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10187 FAM192A_Fyv6_N FAM192A/Fyv6, N-terminal domain
Representative CDS sequence
>Lus10038035 pacid=23163878 polypeptide=Lus10038035 locus=Lus10038035.g ID=Lus10038035.BGIv1.0 annot-version=v1.0
ATGGAGGAAGAATCAGCTGCTCCGATACGGTTAATGAATTTCGTCTCTGAAGAACAGTTAGATGAAGCAAAGAAAACGAGAGGGGAGCGAGTCGAGGACG
GCACTGCTCAGAGAGATCGGCCTCTCCACGAAATATTGAGGGAGAACAAAGACAAGAAGGATGCTGAATTCAATGAACGGTTCAAGCACAGGCCACCGAA
AGCTTTGGATGAAGATGAGACTGAGTTTCTTGACAATCTGGAGATGTCGAGGAAGCAGCTTGAACAACAAGTCGCAGATGAGGAAGCTGAGCAGCTTCGA
AGTTTTCAGGCAGCAGTTGCAGCACAGTCCAGCATTACTTACGAATCGGAAGAAAAACAACTTCCTTCGCTAGTAAAACAAGAGCAGAAGCCAGCGGCGG
GAAAGAAGAATCATCCATATCGTCCAAACGTAATAATCAAAGTCAAGCCTCCTCAGGCAAAGAAAGCAAAGACGGAGAGTGCCGCCAATGAAGCTTCCGC
AACACCTGCAGTGAACGGAAAATCTTCAGATCAAGGACAGAATCCAACCGGCATCGTCGATAAGTATAGTGATGTCGTGGCGAGAACAGGTCTTGTTGTG
TACAGTGATGAAGAGAGTGATGAAGACGATTCATAG
AA sequence
>Lus10038035 pacid=23163878 polypeptide=Lus10038035 locus=Lus10038035.g ID=Lus10038035.BGIv1.0 annot-version=v1.0
MEEESAAPIRLMNFVSEEQLDEAKKTRGERVEDGTAQRDRPLHEILRENKDKKDAEFNERFKHRPPKALDEDETEFLDNLEMSRKQLEQQVADEEAEQLR
SFQAAVAAQSSITYESEEKQLPSLVKQEQKPAAGKKNHPYRPNVIIKVKPPQAKKAKTESAANEASATPAVNGKSSDQGQNPTGIVDKYSDVVARTGLVV
YSDEESDEDDS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G62140 unknown protein Lus10038035
[exp]
0 1
AT1G17330 Metal-dependent phosphohydrola... Lus10040985
[exp]
1.0 0.9480
AT2G21150 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP... Lus10007576
[exp]
2.0 0.9281
AT3G60360 EDA14, UTP11 U3 SMALL NUCLEOLAR RNA-ASSOCIA... Lus10034210
[exp]
2.0 0.9212
AT2G45320 unknown protein Lus10000786
[exp]
3.2 0.9207
AT5G61240 Leucine-rich repeat (LRR) fami... Lus10037108
[exp]
3.5 0.9158
AT3G62140 unknown protein Lus10009976
[exp]
4.6 0.9119
AT2G39740 HESO1 HEN1 suppressor 1, Nucleotidyl... Lus10030154
[exp]
4.9 0.9259
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Lus10006383
[exp]
6.4 0.8748
AT3G02710 ARM repeat superfamily protein... Lus10026721
[exp]
7.7 0.8861
AT2G39630 Nucleotide-diphospho-sugar tra... Lus10001691
[exp]
8.7 0.8837

Lus10038035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.