Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17160 95 / 3e-20 unknown protein AT3G03130 94 / 3e-20 unknown protein AT1G76740 53 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009977 [exp] 805 / 0 AT3G03130 94 / 3e-20 unknown protein Lus10028114 [exp] 50 / 2e-06 AT1G76740 76 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081600 [exp] 124 / 2e-29 AT3G03130 131 / 4e-32 unknown protein Potri.019G046801 [exp] 122 / 7e-29 AT3G03130 86 / 3e-17 unknown protein Potri.002G066450 [exp] 50 / 6e-06 AT1G76740 64 / 1e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038036 pacid=23163799 polypeptide=Lus10038036 locus=Lus10038036.g ID=Lus10038036.BGIv1.0 annot-version=v1.0 ATGGAAGGATTCGATTTCCACAGTCTTGCGAGGAAGGACCTCCAAGCTCTCTGCAAGCTCAACAAGATCCCCGCCAACAGCACCAATGTTGCCATGGCCG ACTCCCTTCAAGCTCTCCCCCAGGTGGAAGGACTCGACGAATTGCTTCAAACGTTGAGCTCCGATCAGCAAACTGTGCCTGGAACCCCGGCTGTTCCCCA ATCAGCTCGCAGAAGTGCGATTAGGAGAAACCCTACGGCTGTTAAGGAGCCGGAAACACTGACTCGCACACGGCGCACCGTTAAGAAAGCGGCAGCGCCA GAGGCTGGTGGATGTCCTCCTCAAACTCCGGCAACGGCGGTAAGCAGGAGGAAAGTGTCATCAGGGACTGAAACTAGCAAATTCGATTTGGAGGCTGGAG AAGAAGTAGCATCGGTTCAGAAGGCTTACAGCACTAGGCGGTCAGTGAGGCTGTTAGGGAAGAGCATGGGGAAAATGTCCTTGAAGGAAACGGATGTTCA ACCGTTTGAAGTAGCAGCAGGAGCTGATTCGTCGATTGGTCTTGATGAGACCTCTGAGGAAACCAACAACTCTTGCCGAAATCTTGCCTCTTCGATGGAG AATGAGAGTCATATCAAAGATGCAAATGATGGAAGCAATAGATCGATTAAGGAGATCACTGATGAAACCAATGTTTCGTGCAAAAATCTGGACTCATTGA TGAAGAATGAAACTGATCATGCAAATGATGAAGTTCCAAGCTTAGATGTTGAAGATAAAGAGAACTCCGGTGATCTGGACCTTCAGAAGGCTGACTACGC AGAAAATGCAGCAGCTGATCTGACTCATGTCACGGATGAGAGTGAGAGTGTGGTGGAATCCAGCAATCCTGACGCTTCCATGGTGTATAATTCGATGGAT ACAAAAACAGAAATGAGCCATGAACTTGATGCCAAGAACATTGATTCCAATGCTGAGATAGAAACTGGTAAGAGTTCTGACGACGAGAGGTTAACAATGG AACAACAAGAGGCCATTGTTGAAAGCTTTACTTCTGCTCGTCAATCTGTCAATTCCTCTGAAATCGATTCTCTTGCAGAACCAGATGTCCTGACTCCTCC AATAAGACCTACTTTGAGATCGATAATTGTAATGGGCTCAAACAGCCACCAACTTCACACTCCTGCTCCACAATCGGTTAAAGATAGCTCTGCTGTTGTA GATACTGATCCAGAATCTGTTGAGAAGACATCTGAAGGAGATGTTGAAGATGATAACATGGAAGAAGTTTCATCTTCCGCAGCTAACCAACCTCCGACTC CTGCTCCACAAGTGGTTGAAGATATCTCCGCTGATGCTGAACCAGAAACCGTTCAGAGGGCATCTGAAGGAAATGTTGAATTTGCTAACATGGAAGAAGT CTCATCTTCCGCAGCTGTTAACCAACTTCAGACTCTTGCACCACAAGTGATTGAAGATAGCTCTGTTGCTGATGCTGATGCTAAACCAGAATCTGACGGG AAGGCATCTGAAGGAGATGTTCAAGTTGATAACATGGAAGAAGTCTCTTCTTTCTCAGCTGCTAACCAAATCGTCATCAAGGAGGAGGAATTGGATGAGA TGCCTTTGGAAATGTTCATCAACAAGGAGAACGTCAACAAGAAGAAGAAGGAATTCGTTGACATGAGTCTGACGCAGTTGAGCAAGATGCTGAAAGAAAA GCTGAAGCTCAAAGCAGATGAGAAAACTGAGAAGAGACAGGCATTGGCTGAGAACATCAACAATGGCAGCTGA
AA sequence Show only first row Show all	>Lus10038036 pacid=23163799 polypeptide=Lus10038036 locus=Lus10038036.g ID=Lus10038036.BGIv1.0 annot-version=v1.0 MEGFDFHSLARKDLQALCKLNKIPANSTNVAMADSLQALPQVEGLDELLQTLSSDQQTVPGTPAVPQSARRSAIRRNPTAVKEPETLTRTRRTVKKAAAP EAGGCPPQTPATAVSRRKVSSGTETSKFDLEAGEEVASVQKAYSTRRSVRLLGKSMGKMSLKETDVQPFEVAAGADSSIGLDETSEETNNSCRNLASSME NESHIKDANDGSNRSIKEITDETNVSCKNLDSLMKNETDHANDEVPSLDVEDKENSGDLDLQKADYAENAAADLTHVTDESESVVESSNPDASMVYNSMD TKTEMSHELDAKNIDSNAEIETGKSSDDERLTMEQQEAIVESFTSARQSVNSSEIDSLAEPDVLTPPIRPTLRSIIVMGSNSHQLHTPAPQSVKDSSAVV DTDPESVEKTSEGDVEDDNMEEVSSSAANQPPTPAPQVVEDISADAEPETVQRASEGNVEFANMEEVSSSAAVNQLQTLAPQVIEDSSVADADAKPESDG KASEGDVQVDNMEEVSSFSAANQIVIKEEELDEMPLEMFINKENVNKKKKEFVDMSLTQLSKMLKEKLKLKADEKTEKRQALAENINNGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17160			unknown protein		Lus10038036 [exp]	0	1
AT3G03130			unknown protein		Lus10009977 [exp]	1.4	0.9758
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	1.7	0.9799
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	2.4	0.9742
AT4G15830			ARM repeat superfamily protein...		Lus10034168 [exp]	4.0	0.9625
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	4.5	0.9602
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10012261 [exp]	4.5	0.9643
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	4.5	0.9704
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	6.0	0.9636
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	6.7	0.9604
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10002141 [exp]	10.4	0.9353

Compare expression of checked genes

Lus10038036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.