Plant FIBer expression Database

Lus10038037 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49920 149 / 8e-38 MuDR family transposase (.1)
AT1G64260 145 / 1e-36 MuDR family transposase (.1)
AT1G64255 122 / 8e-29 MuDR family transposase (.1)
AT3G22170 49 / 7e-06 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2)
AT3G30370 44 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010073
[exp]
974 / 0 AT1G64260 155 / 3e-39 MuDR family transposase (.1)
Lus10039995
[exp]
45 / 3e-05 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G207100
[exp]
46 / 9e-05 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2)
Potri.T171101
[exp]
44 / 0.0002 AT1G10240 789 / 0.0 FAR1-related sequence 11 (.1)
Potri.008G108800
[exp]
44 / 0.0003 AT1G10240 788 / 0.0 FAR1-related sequence 11 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0274 WRKY-GCM1 PF03108 DBD_Tnp_Mut MuDR family transposase
CL0274 PF04434 SWIM SWIM zinc finger
CL0219 RNase_H PF10551 MULE MULE transposase domain
Representative CDS sequence
>Lus10038037 pacid=23163856 polypeptide=Lus10038037 locus=Lus10038037.g ID=Lus10038037.BGIv1.0 annot-version=v1.0
ATGGTCTCGGAACGTAACAGGATCACCAACACCGTGAGTCCTTTCGACGTTGTTGTTGCCGGTGAGCAGAAGCTACAGAAAGTATGGGAGAACTGCATCA
CCGGATTGCACCAGCAGTTCAACAACGTGGCCGAAGTACGGGAAGCTCTCCGCCGATACTCACTGGCTCAAGGATTCACCATCAAGTTCAAGCACAACGA
TTCCAGACGAGTGAGCGCCAAATGCAAGGCCGAAGGCTGCACGTGGAGGATCTTTGCTTCAAAGCTCTCCACAACCTCTTTCTTCCGAACTAAAAGGCTC
GTCGATTCACACACATGTGGAGTCGGCTCGGGTTCAGCTCCTCCTCCTCACGCTTCCAGAAAGCTAGTAGCCACCATTGTCAAGGAAAAATTGCTGAGCA
CACCGAATTACAAGCCGAAGGAGATTGCGAAAGAGATCCAGGAGGAGTTCGGGATCGAGTTGAGATACTCGCAGGCATGGCGCGGAATGGAAGCCGCTAG
ACAGGAGCTTCAAGGCTCGTACAAAGAAGCGTACAATCTATTACCATGGTTACGCCAGAAGCTGATGGAGACGAACCCTGGTAGTTTCGTCTCGCTCAGA
ACGGCGGAGGACGACCTGACATTCCGGGGATTCTTTGTCGCGATGCGTTCCTCCATCTTCGGTTTCGAGAATGGCTGTCGTCCGTTGATCTTCCTCGACG
AGGTCAACGTGAGGTCAAAGTACCAATCGGAGCTTCTCACGGCCACCGCAATAGACGGGAACGAGGGAATTTTCCCTCTGGCGTTCGCGGTGGTGGATGC
TATAAATGAGGAGACCTGGCATTGGTTTCTCGAGCAATTAAAATCTGCGTTAACCGTTCCTCAGTCGATCACGTTTGTTTCGGATCGGCAGATGGGATTA
CGACAGTCGATTGCGGTGCTGTTCCAGAACTCGTACCACGGTTTCTGCATCCGTCGACTTTCGGACGAATTGCTGAAAGATCTCAGGGGGCCGTACACTC
AGGAAGTGGTGGACGTTCTGGTCGCTCATCTCTACGACGCTGCTCGAGCTTCGACGCGAGAAGGTTTCTTGAAATCGATGGATAGTATCAAGAGCATCTC
TCCTGAGGCCTACGGGTGGATCATGAACAGCGAACCGGAACACTGGGCGAACCACATTTTCGTCGGTTCGCGGTATAACCAGATAACATCGGGGGTTGCG
GAATCGTTCTACAGCTGGGTGCCGGAGATCCCAATGACGATCGTCCAGTTCGTGGACACGATCCGGCAGAAAATAATGGAGCTGATCTACGCTCGGAAAG
TCGAATCGGACCAGTGGGTGTCGAGAGTGACACCTTCGTTGGAAGAGAAGCTGCAGAAGGAGGTAATGAAAGCGCAGTCGTTTCAACCCTTTGCTACCTC
GTCACAGAATCCTGCGATTTCGGAGAATACGTTTGAGGTTCGCGATTTCTTTGGCTCGATTAACCACACAGTCATCATCGATTCATGGAGCTGCTCGTGT
AGGGACTGGCGGCACAACGGGTATCCATGCTCGCACGCCGTTTCGGTTCTCCAATGTCTCGGGAGGGATCTGTACGACTACTGTGCGAAGTACTACACTA
CTGAAGCGTTCAGGTTGACTTACGGTGAGCCGGTCAATCCGGTCCCGACTGCCGGTAGGCCGATTCACAGTGTGTCGACGGAGATTGTGGTGGAGGCTCC
ACCGCTAAGGAGGCTGTCTGGGCCTCCGAAGCAGCGGAGGATTCGGAACAAGGGGACAATCAAACGGCCGCTGCATTGCAGCAAGTGTAAAGGTGCTGGG
CATAATAGAGCAACTTGCGATGTTTTCTCATAG
AA sequence
>Lus10038037 pacid=23163856 polypeptide=Lus10038037 locus=Lus10038037.g ID=Lus10038037.BGIv1.0 annot-version=v1.0
MVSERNRITNTVSPFDVVVAGEQKLQKVWENCITGLHQQFNNVAEVREALRRYSLAQGFTIKFKHNDSRRVSAKCKAEGCTWRIFASKLSTTSFFRTKRL
VDSHTCGVGSGSAPPPHASRKLVATIVKEKLLSTPNYKPKEIAKEIQEEFGIELRYSQAWRGMEAARQELQGSYKEAYNLLPWLRQKLMETNPGSFVSLR
TAEDDLTFRGFFVAMRSSIFGFENGCRPLIFLDEVNVRSKYQSELLTATAIDGNEGIFPLAFAVVDAINEETWHWFLEQLKSALTVPQSITFVSDRQMGL
RQSIAVLFQNSYHGFCIRRLSDELLKDLRGPYTQEVVDVLVAHLYDAARASTREGFLKSMDSIKSISPEAYGWIMNSEPEHWANHIFVGSRYNQITSGVA
ESFYSWVPEIPMTIVQFVDTIRQKIMELIYARKVESDQWVSRVTPSLEEKLQKEVMKAQSFQPFATSSQNPAISENTFEVRDFFGSINHTVIIDSWSCSC
RDWRHNGYPCSHAVSVLQCLGRDLYDYCAKYYTTEAFRLTYGEPVNPVPTAGRPIHSVSTEIVVEAPPLRRLSGPPKQRRIRNKGTIKRPLHCSKCKGAG
HNRATCDVFS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64260 MuDR family transposase (.1) Lus10038037
[exp]
0 1
AT3G22990 LFR LEAF AND FLOWER RELATED, ARM r... Lus10006635
[exp]
1.7 0.8952
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Lus10018357
[exp]
5.3 0.8819
AT1G26580 unknown protein Lus10036888
[exp]
5.5 0.8260
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Lus10014912
[exp]
7.4 0.8335
AT1G17370 UBP1B oligouridylate binding protein... Lus10013167
[exp]
8.4 0.8462
AT3G26990 ENTH/VHS family protein (.1) Lus10032013
[exp]
11.0 0.8199
AT3G10650 AtNUP1 unknown protein Lus10008959
[exp]
11.8 0.8449
AT2G32910 DCD (Development and Cell Deat... Lus10001728
[exp]
12.5 0.8451
AT1G79150 binding (.1) Lus10034234
[exp]
13.1 0.8792
AT5G26710 Glutamyl/glutaminyl-tRNA synth... Lus10026044
[exp]
14.4 0.8132

Lus10038037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.