Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) AT5G27230 82 / 1e-15 Frigida-like protein (.1) AT1G31814 79 / 7e-15 FRL2 FRIGIDA like 2 (.1) AT5G27220 72 / 2e-12 Frigida-like protein (.1) AT3G22440 58 / 2e-08 FRIGIDA-like protein (.1) AT4G00650 57 / 3e-08 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT5G16320 44 / 0.0008 FRL1 FRIGIDA like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009979 [exp] 1489 / 0 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10004132 [exp] 337 / 2e-104 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10033828 [exp] 303 / 4e-86 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10004131 [exp] 187 / 1e-48 AT5G48385 72 / 8e-13 FRIGIDA-like protein (.1) Lus10042965 [exp] 121 / 3e-28 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 117 / 4e-27 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10001723 [exp] 118 / 7e-27 AT5G48385 / FRIGIDA-like protein (.1) Lus10002146 [exp] 96 / 3e-20 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 94 / 1e-19 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044000 [exp] 222 / 7e-61 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044100 [exp] 217 / 1e-59 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G043900 [exp] 218 / 1e-58 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.007G050800 [exp] 114 / 5e-26 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 108 / 2e-24 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.014G175200 [exp] 104 / 4e-23 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 100 / 2e-21 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.005G044200 [exp] 100 / 3e-21 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.008G153000 [exp] 60 / 7e-09 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.015G110066 [exp] 54 / 3e-07 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10038038 pacid=23163755 polypeptide=Lus10038038 locus=Lus10038038.g ID=Lus10038038.BGIv1.0 annot-version=v1.0 ATGAATGGAGAAGCAAATGTGGAAATATCCCTCACACTCGGCGGCACCGACGAGTATCCGCCGCCGACGCCAACACCGGCGACGGATATGCAGTCTCGTC TCCGGGAAACAATCGAGCAGGTCCATCACCACGCGTCCTGGATTGATTCCTTCGCGGCTTCGCTCGAATCCACAGTCTCCGCCGCCGTGGAAGCTCGGTC CAACGAGTGGCGACTAGCAGAGGAAAACAATGCGAACGAGAGGCTGAAGGAGAAGACGTTGCAGCTGGAAGCGAAGGAGAATACATTCCACCTGCGGATG AAGAACGAGATCGAGTTCCTACAGTCGGAGAAGGCGGTTATCGAGAAGAAACTGCAGGAGCTAGAGGAAAAGGAAGAGGAGTTTGAGTCACTCGGAAGTT ACGTGGAGGAGAGAGCGATTCAAGTTCGGGAGATCGAGGAGCAGATGGAAGACCGGCTGAAGGAAGTTGAAGCGAAGGAGAAGGAGATTGAAGAATGCTT CCGTCGGTTCCAGTTGAGGGAGAAAGGATTCGAGGAGCAATTGGCGGACTTCAAACTGAAACAGTGGGAATTCCAGGTTCGTTTGAATGAACTTGACGCT AGAGAGAATCAATTCAAGGAAATCGAATCAAAACTTGTGAAACGGATTGAAGAGGCTGAACTTAGGGAGAAGCTGCTTGAAGAGGAGCGATTGGCGGAGT TCAAACTGAAACAGTCAGAATTCCAGGTTCGTTTGAGTGAACTCAATGCTAGAGAGAATCAATTCAAGGAAATCGAATCGAAACTTAAACGGATTGAAGA GGTTGAAGTTAGTGAGAAGCTGCTCGAAGAGAAGCAAAAGGAAGTTGAATCAGAAGCTGAGAAGTTAGCAGAATTGAAGAAGGATTTAGAGTTGAAAGAG AAGCAACAGGCGGATCATTCATCTGAGGCGAACTTCAGTATTTGCGTTACGATGAGTGGTAAAGACTTGCAGATTTTCGTAAACGAACGTTCCAACGATG GTAGCGATTCGATGAAAGACGAAGTAGAGGCAGCTCTGAAACTCTCATCAGAACCTGCAAAGCTCGTCCTGGACGCCATGGAAGGATTCTATCCTCCACA TTTGAAGAAAGGAGAAGTCGAATTTGAAGAGGTCGTCATAAGGAAGAGCTGCTTGATGCTATTAGAACACTTAACAAGAATGTCGCCGGAGATCAAACAA ACTGTGAGAAAAGAAGCAATGAAGTTAGCCTGTGATTGGATGACAAGGATGAAGTGTGATGCCGATCACTCCTTGGAAGTTCTAGCGCTTCTGCAACTCA TGGCTGCGTATGGATTAGCCTCCACCTTCGATGAAGACGAGCTCATGGTTAGGATTCGTGTCATTGCTCATTACAGCCAGACTCCTAGGCTTCTGCAAGA CCTTGGTCTTGCTAACAAGATCTCTGGTGTAATTCAAAAGCTTATTGAAAATAAGCTCCAGTATGAAGCTTATAGACTTGTTTCTGCACTTGAGTTGCAC AATGAGTTCCCAAGTTTGTCACCTTGTTCGAAAGAATATCATGAGTCCGATGCTGTTCTTGTGTCATCGGATACTGGTCCCATCACTCCCGATAGGCTGA TGATACCTCAATGTAGTGGAGCTAAACGTTCATGGATAGATGCTTGTGCGGATGGTAATCAAAACGACCATACCGATCTCGAGCATGCTACCTCTGGGAA TTTACCTTCGCAGCAGCCAGAAATGTCGAATTTACCTCATGAGGATCAGGAAAGTTTAACCAGTGACCATCAAGCTGGTTGCACCGATCCGCTCCTCGAA TTTCACCTCTCTGAAGTGGATGAGATCGAAAATTTAAAGGGCGGCAAAACCTCGCTGTTCATGCCTGAATGCCTCAAGAAGGGCGGAACGAATCTGAAAT CGTTATGCTGGAAAATCGAAAAAAACGAGTTACATTGCTCCGAGGTATCCGCTTGTCTCCAACTCGTATCAGATCCAGCAGAGTGTGTTCTAGGAGTAGT AAAGAATCCCTCTTCTTTCAAATGGAAGCGGGGAGATGAAGAAGAACAAGTCCGGTTTGCTTTCCCAGAACACAGTCCGCTGTTATTGATGGACCGAATG TGGCGAATGGCTCCCCAGATTAGCGAAAACACACAGAGAGAAGCGCTGAGCTTCGCTGAGGACTGGAAATCTAAACTAGTTGCTGCTAATCAGATAAAAG ACGAGAACACAGAACTCGTTAGTTTCGTATTGTTCTTAGCTGCCTATAACCTGGACTCCGCTTTCGACCTGCATGACTTGTTCAACCTTTTCCAGACCAG CCATTGCTGCTTGAACCTTACTAAGCTGTTTCGAGCTGTTCGCTTCGAAGATTTGGTTTCCAAGTTTATCGAGTACCTGCTGAGAAACAAGCGGCCGAGG CAAGCTCTTCAGTGTATTCATTCGTCGAGCTTGCTCGAGAACTCCCCTTCAATTGAAGACCTCAGTAAAGAGCTACAGATATGGAAAGCATTACTCACAT CTGTTTCGGATCATTACTTGGTCGATAGTTTCAAGGCACGCATTTCGTTTCTCGAGAAGCGGAAGGCGAACAAAATTCGACCAGAGACTGCGTCCCCGAA AGCTGCAGGGGTTTCTTGCGCCACAAACAATACGTCTTCTTCCTCAACCGCTTCGCAACCTGCCAACAAGAGGCGTAAGGTAGTTTCATCATCGGCGTTG ATGAATGGAAATCGAAGAAAACCAGTCCGGAAGTTCCATCCTCCGCCACATCCTTTGCAGTTCACGGGAAGTTCCCCGGTGGTTGTTCCTTTGGTAATTG CGCCTGATGGAATCGTATTCCGACATCTTCCTCCTCCTGCCGGCCCCTACCCTGGACATAAAACCTTCTGA
AA sequence Show only first row Show all	>Lus10038038 pacid=23163755 polypeptide=Lus10038038 locus=Lus10038038.g ID=Lus10038038.BGIv1.0 annot-version=v1.0 MNGEANVEISLTLGGTDEYPPPTPTPATDMQSRLRETIEQVHHHASWIDSFAASLESTVSAAVEARSNEWRLAEENNANERLKEKTLQLEAKENTFHLRM KNEIEFLQSEKAVIEKKLQELEEKEEEFESLGSYVEERAIQVREIEEQMEDRLKEVEAKEKEIEECFRRFQLREKGFEEQLADFKLKQWEFQVRLNELDA RENQFKEIESKLVKRIEEAELREKLLEEERLAEFKLKQSEFQVRLSELNARENQFKEIESKLKRIEEVEVSEKLLEEKQKEVESEAEKLAELKKDLELKE KQQADHSSEANFSICVTMSGKDLQIFVNERSNDGSDSMKDEVEAALKLSSEPAKLVLDAMEGFYPPHLKKGEVEFEEVVIRKSCLMLLEHLTRMSPEIKQ TVRKEAMKLACDWMTRMKCDADHSLEVLALLQLMAAYGLASTFDEDELMVRIRVIAHYSQTPRLLQDLGLANKISGVIQKLIENKLQYEAYRLVSALELH NEFPSLSPCSKEYHESDAVLVSSDTGPITPDRLMIPQCSGAKRSWIDACADGNQNDHTDLEHATSGNLPSQQPEMSNLPHEDQESLTSDHQAGCTDPLLE FHLSEVDEIENLKGGKTSLFMPECLKKGGTNLKSLCWKIEKNELHCSEVSACLQLVSDPAECVLGVVKNPSSFKWKRGDEEEQVRFAFPEHSPLLLMDRM WRMAPQISENTQREALSFAEDWKSKLVAANQIKDENTELVSFVLFLAAYNLDSAFDLHDLFNLFQTSHCCLNLTKLFRAVRFEDLVSKFIEYLLRNKRPR QALQCIHSSSLLENSPSIEDLSKELQIWKALLTSVSDHYLVDSFKARISFLEKRKANKIRPETASPKAAGVSCATNNTSSSSTASQPANKRRKVVSSSAL MNGNRRKPVRKFHPPPHPLQFTGSSPVVVPLVIAPDGIVFRHLPPPAGPYPGHKTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48385			FRIGIDA-like protein (.1)		Lus10038038 [exp]	0	1
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	4.9	0.7466
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	5.2	0.7900
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	9.2	0.7367
					Lus10026969 [exp]	11.7	0.7377
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	14.8	0.7342
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	15.9	0.7533
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10011645 [exp]	19.3	0.7296
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	20.7	0.7527
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	24.3	0.7457
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	25.2	0.7277

Compare expression of checked genes

Lus10038038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.