Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47020 589 / 0 Peptide chain release factor 1 (.1.2) AT3G62910 244 / 1e-76 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT1G56350 166 / 2e-46 Peptide chain release factor 2 (.1) AT5G36170 131 / 1e-33 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G33330 59 / 1e-09 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009980 [exp] 820 / 0 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10005944 [exp] 244 / 2e-76 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 228 / 2e-70 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10010922 [exp] 164 / 3e-45 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 162 / 6e-45 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10036446 [exp] 127 / 2e-32 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 120 / 3e-30 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10008558 [exp] 61 / 4e-10 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114000 [exp] 635 / 0 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.002G188200 [exp] 396 / 3e-136 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.014G133400 [exp] 239 / 1e-74 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.013G009200 [exp] 165 / 1e-45 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.008G075800 [exp] 139 / 1e-36 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.006G045200 [exp] 67 / 6e-12 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.019G063800 [exp] 62 / 1e-10 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1) Potri.010G181600 [exp] 48 / 3e-07 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10038039 pacid=23163677 polypeptide=Lus10038039 locus=Lus10038039.g ID=Lus10038039.BGIv1.0 annot-version=v1.0 ATGAGATGGAGCTTGAACGTGGGTGCAATGGCGATGAAGCAGCTTCGTCAGCTTCGATTACAGTCCTCCCCAGCAACCCCTTGCTCCAATTCCACCATTC AAAATTCATTTCTCCAGTCCTTTTCCCCGTCAATTCCTCGCCTTTACTCTACTGGTGGGTCAGAGTTTCAAGTCCAGCTGTCTCCGGATCTCATAAGGAT AATGGAGCACAGGCTATTAGCTATTGAACACCGGAGTGCTTCTCTAGAGAGCTTCATCAACCGGCCAGATTCCTCACCATCAGAGTTTTCAAGGGCGAAT AAGGAGCTCCGTAAGCTTAAAGCGTTGATGGATCTCATCAATGAGCTCAGGACTAAACAGAAGGAGATTGATGGTCTTAAATCGATGCTGTCTGAATGCG TGGATGATAAGGAGATGACCGATATGGCGAATGAGGAATTGGATCATGCACTGAATGAAGAGAAAAGGATTCAGAGTTTGCTGCTGAAATCATTGCTTCC GAAGGATGATGCCGATGAAAGAGACTGTATTTTGGAGGTGAGGGCAGGAACTGGAGGTGAAGAGGCTTCTTTGTTTGCAATGGACATATTCAAAATGTAC GAGAGATACTCGCAGAAGAACGGGTGGAAATTCGAAGTGGTTGATATAGCAGAGTCTGGTCTGAAGGGTTTCAAGGAAGCCAGCGCTGCAATCTCAGGGG CTGATGTTTTCGGGAAGCTGAAATTCGAGAGCGGGATTCATAGAGTTCAGCGAGTTCCAGTTACGGAGAAAGCTGGGCGAGTTCACACAAGCGCGGTGTC TGTTGCTATCCTTCCCCAAGCTGACGAGGTTGATGTTCAGCTGAAGAATGACGATATAAGAATCGACACTTACAGATCTGGCGGTTCAGGTGGTCAGCAT GCTAATACGACGAATAGTGCTGTCAGAATAACCCATATTTCGACAGGGATCGTGGTGTCCATACAAGATGAACGGTCCCAGCATATGAACAAGGCGAAAG CAATGAAGGTGCTCTGCGCGAAGCTCTACGAGATGGAAAGGTCGAGACTTCATCTGAACCGGTCGAAACTTCGATCAGACCAAATTGGTAGCGGAGATAG ATCGGAACGAATCAGGACGTACAACTTCCCTCAAGGGCGGGTGACCGATCACCGGGTTGGCATCACTCACCACGCAATCACTGATGTGCTGCAGGGAGAG AGTCTGGATGTGTTCATTGAGGCTCTTCTTCTTCAGCAGGAAATGGATGCCATTGAATCGTTCACTTCAGCCGATTGA
AA sequence Show only first row Show all	>Lus10038039 pacid=23163677 polypeptide=Lus10038039 locus=Lus10038039.g ID=Lus10038039.BGIv1.0 annot-version=v1.0 MRWSLNVGAMAMKQLRQLRLQSSPATPCSNSTIQNSFLQSFSPSIPRLYSTGGSEFQVQLSPDLIRIMEHRLLAIEHRSASLESFINRPDSSPSEFSRAN KELRKLKALMDLINELRTKQKEIDGLKSMLSECVDDKEMTDMANEELDHALNEEKRIQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMDIFKMY ERYSQKNGWKFEVVDIAESGLKGFKEASAAISGADVFGKLKFESGIHRVQRVPVTEKAGRVHTSAVSVAILPQADEVDVQLKNDDIRIDTYRSGGSGGQH ANTTNSAVRITHISTGIVVSIQDERSQHMNKAKAMKVLCAKLYEMERSRLHLNRSKLRSDQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAITDVLQGE SLDVFIEALLLQQEMDAIESFTSAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47020			Peptide chain release factor 1...		Lus10038039 [exp]	0	1
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	7.3	0.7353
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10030392 [exp]	15.0	0.7130
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	29.7	0.6749
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030660 [exp]	31.7	0.6434
AT5G06440			unknown protein		Lus10021251 [exp]	37.0	0.6595
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10014256 [exp]	46.6	0.6458
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	47.5	0.6482
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10007893 [exp]	48.0	0.6458
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10017072 [exp]	53.7	0.5921
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	54.7	0.6483

Compare expression of checked genes

Lus10038039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.