Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62190 88 / 2e-22 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009981 [exp] 189 / 4e-61 AT3G62190 139 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188300 [exp] 112 / 3e-31 AT3G62190 171 / 4e-56 Chaperone DnaJ-domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10038040 pacid=23163896 polypeptide=Lus10038040 locus=Lus10038040.g ID=Lus10038040.BGIv1.0 annot-version=v1.0 ATGGTGGGAGACGAAGCCAGAGTCTTGCTAGGCTTCCCTCCCAATTCCACCCCAACCATCTCCCAGGTAAAAGCTGCTTACAAGAAGAAGGTTTGGGAAT CGCATCCCGACTTGTTCCCAGTTCATGACAAGTGCCGTGCTGAGTCCCAGTTCAAGTTGGTTTCAGAGGCTTATACTCACCTGCTATCTGGCGGACTTGG AACCGTTCATGACTTTTCCGATTCAGCAGCCAGATACGCTAGAGTAGTCGTCAGAGCAGGAGTGCCAAAGGGACCAACGGGAAGAAACGAACTCCGGAGG CTATGGATTCCGTTTCTATTTCTTGTTGGGGGGACCATTGGACTAGGAGGTTTCATCGGCTCCAGGTTATCGATCTACTTCCGGCCTCATGAATCTGAGC TGCCGCCCTCCTACCGTGGGGCTGTCATTCATTCTTCCCCCATCTACTTCCCATCCAACGCCGCACCCTTATACCATCAAACCCTTAGCCATCTTTCTCA CCGTACGCACCCTCACGACGACCCCAACCCCCCACCATGCCCCCGAAACAAGCTCATCAACATGGGCCGTGCAAAATTGGGGCCGCTGGGGACGCGCAGG GGTCCGATACCGGAGGAGTTTAATGAGGTACTGTATGAAGATGAGGACATGGTGGATGTAACGGAGAACCACCGTCAACGGCGTCGTGAGGAGGCCTCAT TGAAACCCTCCAAGTCGCCGAAGAAAGATAGCCTCGGTATTATGCCGGTGAACCGAGCGGGACACACTAATGTGATCCGCCCATCGGCATAA
AA sequence Show only first row Show all	>Lus10038040 pacid=23163896 polypeptide=Lus10038040 locus=Lus10038040.g ID=Lus10038040.BGIv1.0 annot-version=v1.0 MVGDEARVLLGFPPNSTPTISQVKAAYKKKVWESHPDLFPVHDKCRAESQFKLVSEAYTHLLSGGLGTVHDFSDSAARYARVVVRAGVPKGPTGRNELRR LWIPFLFLVGGTIGLGGFIGSRLSIYFRPHESELPPSYRGAVIHSSPIYFPSNAAPLYHQTLSHLSHRTHPHDDPNPPPCPRNKLINMGRAKLGPLGTRR GPIPEEFNEVLYEDEDMVDVTENHRQRRREEASLKPSKSPKKDSLGIMPVNRAGHTNVIRPSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62190			Chaperone DnaJ-domain superfam...		Lus10038040 [exp]	0	1
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	1.4	0.8160
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	7.1	0.7450
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	7.7	0.6944
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	8.5	0.7133
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	15.9	0.7133
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	17.5	0.6756
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10029939 [exp]	20.4	0.6800
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	20.5	0.6820
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	22.9	0.6884
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	24.4	0.7101

Compare expression of checked genes

Lus10038040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.