Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62200 177 / 7e-49 Putative endonuclease or glycosyl hydrolase (.1) AT3G62210 89 / 1e-19 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT5G61180 77 / 4e-15 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 67 / 3e-12 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G60940 59 / 2e-09 Putative endonuclease or glycosyl hydrolase (.1) AT5G09840 50 / 2e-06 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 49 / 6e-06 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G61190 0 / 1 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009982 [exp] 368 / 6e-121 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 56 / 5e-08 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 55 / 9e-08 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 47 / 4e-05 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003800 [exp] 186 / 3e-52 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 172 / 4e-47 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 61 / 9e-10 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 59 / 6e-09 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 43 / 0.0005 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 0 / 1 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 0 / 1 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 0 / 1 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 0 / 1 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10038041 pacid=23163785 polypeptide=Lus10038041 locus=Lus10038041.g ID=Lus10038041.BGIv1.0 annot-version=v1.0 ATGCTAGTGACAAGAGGATCGTGGTCGATATGCTGTTCTGGGCAGAGGACAACCCTGCTCCGGCAAATTATCTGCATATCCGGGGACCGTGATTTCTCCA ATGCACTTCATCAACTCCGGTTGCTGAGATACAACATCCTATTGGCGCAGCCCCCTGGTGCCTCTGCTCCCCTTGTTGCTGCCGCGAAATCTGTGTGGCT CTGGACAAGCCTTGTATCAGGAGGTACTCCGCTTCCTCTTGTTGAATCTTCGCAACCATCCAACAGTAGTAATAAGACTAGTTCACGTACCACAATGCCA AAGACCGGTAGATCATATTCTAGTAAACATGTAAATCCTAGTAGAGGCAAGATTGTTGATTCCAAATTGAAACGGAAGCCAGTTCATGGTAATGGAAATG CAGCTAAACCAGTTGGAGGCCTAGAAAATGTGGAGGCGAAGCTGTTTGTGAAGTTTTGCCTACCCCATGAGTTCCCTGCAAGTGGTGAATATATTGTTTC TAAGAATAGCTATACTGCAAATATTTTCCCAGGTACATCTAATGATCCCAAAATAGATCCTTCTTGTCACATTGTTAGTAACCCGAATCACCAAAATTCA AATAACCAAAATTTCCCTTCGATGCCTAATACCCACCCTTTGCTGCAATCAAATCTTATACCCCCTTACAGTACTGCTTATCCTAATCATGCTTATCATC CAATGCCTCCTAGATCCAATAATCTTTGTTATGGTCCAATGCCTACTGGACCCAAAATCTTGGTTATCCTCAAATGCCTATTATACCTGATTGTCTCCAG TAATGCTATTCTGGGAACTCAAGGCCATGATCCTTCTCCTTCAGACGACATCAACGGCCTTATTGATGTTATCCTACGTGCTCTAGATACCCTGAAGCAC GAACAAGTTTCACCAATTCAAGTAAATATCAGTTACTGTATTCGTTTCGGGGATCCAGAACATCGGAATACCGATGTCCAGAAGGCTCTCGACTGTGCCA TTGAGCATAAAAGGGTCAAGAAGCTACGATCAGGTTCCTGGCATCTGTTTGTCCATACGAAGGAGAAGATATGGTTGTGTGTCAATCTCAAAGGTTGCAA CCCTGACGTATTTCCACCAGAAACTTGGGATAGGATCAAGACGTTCATAACTTCACCGGATGGAAGACCTGCCTCTCTGGCTTCCGAATGCAGATACGAA GGTGCTTTGATTCTGAAACGGACATGCTTGGGAAGTTTAGTATTGGGTGAGGTGCTACAGATAATAGAGATGATGATTGATGTGAAGAAATGGATAACTG CTGACCACTCGGGATGGAAACCGGTTGCTATCCTATCCTATCCTGAAACAGGTAAAGACCGCGACAAAGTCCTTACCATATTATACTCCTGTTTGCAGTA A
AA sequence Show only first row Show all	>Lus10038041 pacid=23163785 polypeptide=Lus10038041 locus=Lus10038041.g ID=Lus10038041.BGIv1.0 annot-version=v1.0 MLVTRGSWSICCSGQRTTLLRQIICISGDRDFSNALHQLRLLRYNILLAQPPGASAPLVAAAKSVWLWTSLVSGGTPLPLVESSQPSNSSNKTSSRTTMP KTGRSYSSKHVNPSRGKIVDSKLKRKPVHGNGNAAKPVGGLENVEAKLFVKFCLPHEFPASGEYIVSKNSYTANIFPGTSNDPKIDPSCHIVSNPNHQNS NNQNFPSMPNTHPLLQSNLIPPYSTAYPNHAYHPMPPRSNNLCYGPMPTGPKILVILKCLLYLIVSSNAILGTQGHDPSPSDDINGLIDVILRALDTLKH EQVSPIQVNISYCIRFGDPEHRNTDVQKALDCAIEHKRVKKLRSGSWHLFVHTKEKIWLCVNLKGCNPDVFPPETWDRIKTFITSPDGRPASLASECRYE GALILKRTCLGSLVLGEVLQIIEMMIDVKKWITADHSGWKPVAILSYPETGKDRDKVLTILYSCLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62200			Putative endonuclease or glyco...		Lus10038041 [exp]	0	1
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	5.9	0.6670
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10021929 [exp]	18.0	0.6446
AT4G25330			unknown protein		Lus10012314 [exp]	32.2	0.6074
AT2G48060			unknown protein		Lus10027981 [exp]	37.5	0.5820
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	52.1	0.6047
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	85.6	0.5496
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	91.2	0.5618
AT5G53635			F-box/RNI-like/FBD-like domain...		Lus10037604 [exp]	118.1	0.5525
AT4G23730			Galactose mutarotase-like supe...		Lus10028739 [exp]	128.5	0.5532
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	143.6	0.5422

Compare expression of checked genes

Lus10038041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.