Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62220 585 / 0 Protein kinase superfamily protein (.1) AT2G47060 570 / 0 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G17410 537 / 0 Protein kinase superfamily protein (.1) AT1G48210 520 / 0 Protein kinase superfamily protein (.1.2) AT2G43230 486 / 3e-172 Protein kinase superfamily protein (.1.2) AT3G59350 483 / 1e-171 Protein kinase superfamily protein (.1.2.3) AT1G06700 479 / 2e-170 Protein kinase superfamily protein (.1.2) AT2G30740 476 / 3e-169 Protein kinase superfamily protein (.1) AT2G41970 468 / 5e-166 Protein kinase superfamily protein (.1) AT1G48220 456 / 3e-161 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009983 [exp] 713 / 0 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10010072 [exp] 685 / 0 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1) Lus10004524 [exp] 681 / 0 AT3G62220 591 / 0.0 Protein kinase superfamily protein (.1) Lus10026706 [exp] 491 / 6e-175 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 490 / 1e-174 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 488 / 2e-173 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 489 / 3e-173 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10029295 [exp] 473 / 6e-168 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 472 / 2e-167 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188600 [exp] 649 / 0 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 634 / 0 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 502 / 1e-179 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.007G124000 [exp] 492 / 2e-175 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G036300 [exp] 491 / 2e-174 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G059600 [exp] 481 / 6e-171 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 471 / 5e-167 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 280 / 9e-88 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 275 / 5e-86 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 275 / 1e-85 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038042 pacid=23163726 polypeptide=Lus10038042 locus=Lus10038042.g ID=Lus10038042.BGIv1.0 annot-version=v1.0 ATGAGCTGCTTCAGCTGTTGCGAGGAGGATGAGATCCATAAAGCTGCTGATAACGGAGGTCAATATCCCATGAAGAGTTCTGGAGGAAATTATGGAGGGC AGCATGCGTCAGAAGCAACACCAAAGGGTGCTCAGGTTATAAAAATCCAACCCGTTGAAGTGCCTGCATTACCAGCGGATGAGTTGAAGGAAGTAACTGA GAACTTTGGGACAAATGCTTTGATTGGAGAAGGCTCTTATGGAAGAGTGTATTATGGAACACTCAGGGACGGCCAAGCTGCAGCGATTAAAAAGCTCGAC TCAAGCAAGCAGCCTGATGATGAATTCCTTGCTCAGGTCTCGATGGTCTCAAGACTTAAGCATGGTAACTTCGTTCAGTTGCTTGGGTATTGTGTTGAAG GTGGTTCTCGTGTTCTTGCTTATGAATTTGCATCAAATGGATCTCTTCATGATATTCTTCATGGAAGAAAAGGTGTTAAAGGTGCACAGCCAGGTCCTGT CCTTTCATGGCCACAGCGTGTGAAAATCGCTGTTGGGGCCGCAAAGGGCCTTGAATATTTGCATGAAAAGGCCGATCCACACATCATCCACCGTGACATC AAGTCCAGTAATGTTCTTATATTTGATGATTATGTCGCAAAGATTGCTGATTTCGATTTGTCAAATCAAGCTCCAGATATGGCTGCACGACTTCATTCTA CTCGTGTACTTGGTACATTCGGCTATCATGCTCCCGAATATGCCATGACTGGGCAGTTAAATGCCAAGAGTGATGTCTATAGTTTTGGTGTTGTCCTCCT CGAGCTTTTGACTGGTCGTAAACCTGTCGATCATACTCTGCCTCGTGGACAGCAAAGTCTAGTAACATGGGCTACACCAAGACTTAGCGAGGACAAGGTC AGGCAATGCATCGATACACGACTAGGAGGAGAATACCCACCGAAAGCGGCCGCTAAGATGGCTGCTGTGGCTGCATTGTGTGTGCAATACGAAGCTGATT TCAGACCGAATATGAGCATCGTCGTCAAAGCACTACAACCTCTACTAAACGCCCGGCCAGGACCTGCAGGTGAAACGCCGACCGTTTGA
AA sequence Show only first row Show all	>Lus10038042 pacid=23163726 polypeptide=Lus10038042 locus=Lus10038042.g ID=Lus10038042.BGIv1.0 annot-version=v1.0 MSCFSCCEEDEIHKAADNGGQYPMKSSGGNYGGQHASEATPKGAQVIKIQPVEVPALPADELKEVTENFGTNALIGEGSYGRVYYGTLRDGQAAAIKKLD SSKQPDDEFLAQVSMVSRLKHGNFVQLLGYCVEGGSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWPQRVKIAVGAAKGLEYLHEKADPHIIHRDI KSSNVLIFDDYVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKV RQCIDTRLGGEYPPKAAAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPAGETPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62220			Protein kinase superfamily pro...		Lus10038042 [exp]	0	1
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	1.0	0.9181
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10026607 [exp]	6.3	0.8141
AT4G40050			Protein of unknown function (D...		Lus10012756 [exp]	7.3	0.8649
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	7.4	0.8512
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	9.8	0.8522
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	16.0	0.8166
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	17.3	0.8202
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	22.2	0.8380
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	24.7	0.8309
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	25.0	0.8102

Compare expression of checked genes

Lus10038042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.