Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47070 832 / 0 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 820 / 0 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 266 / 7e-75 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 246 / 5e-68 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G18830 99 / 7e-21 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT2G33810 77 / 2e-16 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G02065 80 / 3e-16 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G15270 74 / 1e-14 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G53160 72 / 4e-14 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT5G43270 76 / 5e-14 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009984 [exp] 1602 / 0 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 893 / 0 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 689 / 0 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10033993 [exp] 104 / 2e-22 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10012782 [exp] 101 / 2e-21 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10028181 [exp] 79 / 2e-15 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10042882 [exp] 79 / 3e-15 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10041935 [exp] 76 / 5e-15 AT2G33810 113 / 4e-32 squamosa promoter binding protein-like 3 (.1) Lus10005548 [exp] 75 / 5e-15 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188700 [exp] 1063 / 0 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.014G114300 [exp] 1046 / 0 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.008G098600 [exp] 824 / 0 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 823 / 0 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.005G258700 [exp] 275 / 7e-78 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G002400 [exp] 271 / 3e-76 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.008G197000 [exp] 106 / 3e-23 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.010G026200 [exp] 103 / 3e-22 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.001G398200 [exp] 77 / 8e-16 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.014G057700 [exp] 79 / 1e-15 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10038043 pacid=23163718 polypeptide=Lus10038043 locus=Lus10038043.g ID=Lus10038043.BGIv1.0 annot-version=v1.0 ATGGAAGCTAGATTTGGTACGGAAGCCAATCATTTCTACGATATGAGGGCAGTAGGGAAAAGGAGTATGGAGTGGGATTTGAATGACTGGAAGTGGGACG GAGATCTCTTCATTGCTAGACCATTGAACGCCGTGGTGCCTTCTTCTTCAGCTGCTGCTTCAGCTGGTATGAGTAAGCAGTTCTTCCCTCTCAATAATAC TAATAATAATTCCTCCAACAGCTCATCGTCTTGCTCGGATGAAGTGGGGAATCTGGAGATGATTGAGAAAGGGAAGAGAAGGAGGAATAAGGTTATTGAT GTTGAAGAAGATGACAGCTTGATGGTGAATGGTCATCAGGAGGAGGAAGCAGCTACTCTTAGCTTGAAGCTTGGTGGCCATGGGGGTGGAGAGATGGTCA ACTGGGAAGGAAACAGCAGTGGGAAGAAGGCTAAGTTGACTGGTGGAGGAGGTAACAATAATAACAGCTCGTCTTCGAGTCGTGCAGTTTGTCAAGTGGA GGATTGTGGTGCTGATCTGAGCAAGGCTAAGGATTATCACAGAAGGCATAAAGTTTGTGAGATGCATTCCAAAGCTACCAAGGCCCTTGTTGCTAATGTT ATGCAGCGTTTCTGTCAGCAGTGCAGTAGAAGAAGGAAAACAAATCCCGAGCCTGGTAGCAATTCAAACACTGTGAATGATGACCAGGCTGGTGGCTACT TGTTGATAAGTCTTTTGAGGACACTCTCCAATATGCACTCCAGTAAATCGGAGAAATCAACAGATCAAGATCTGTTGTCTCACCTCCTAAGGAGCCTAGC TGGGCAGACGATTGAACACGGTGGAAGAAACCTAGCCGGGCTCCTAGAAGGACCTAAAGAATTGATCAACAATGGCTCTCTGTCAGGAAATCCCAAGCAA GCTCAACTTGTGCATGCAAATGGTGCCAGTCTGCAGACCTCGTCTTCCATGAAATCGAGGATGCCGAATAACTTCCCATCATGTTCGGAAGTTAGAGACA GTAATCCTAGGAGCCTTAAGATGAATAACTTCGATTTGAACGATGCGTACATAGACTCAGATGACGGAACTGACGATGTGGAAAGGTCGCCAGTTCCTAC TAATGGAGGGACTAGCTCTCTTGGTTGCCCTTCATGGGCACAACAAGACTCCCTCCAATCAAGTCCTCCTCAGATGAGTGGAAACTCCGATTCGGCTTCT CCTCAGTCACCATCCAGTTCCAATGGAGATGGTCAGAACCGGACAGATCGGATAGTTTTCAAGCTATTTGGGAAGGAACCAAACGATTTTCCCCTGGTCT TGCGAGCCCAGATTCTCGACTGGCTTTCTCATAGTCCGACTGATATCGAGAGCTACATTCGTCCTGGTTGTATAGTCTTAACCATTTACCTTCGTCAGGA TGAGGCAGGTTGGGATGAACTTTGCTGTGATCTTAGCACCAGCTTAAGTAGGCTTCTGCACACATCATATGACTCATTTTGGAGAACTGGATGGCTGTTT GTCATGATGGAACATCAAATTGCATTTGCTTACAATGGCCAGGTTGTTGTGGACACTTCTTCACCTCTTAGAAATACCGACTGCGGTAAAATCTGCAGTG TGAAACCAATTGCAGTGTCTGCTGCTGGAAAGGTTCAATTTTTAATAAAAGGCACAAACTTGTCTCGCTCAAGCACGAGGATACTTTGTGCTATAGAAGG GAAATACATGGTTCAAGAAGACAGTGATGATCTTGCCCATACTGAAGATATCAAGGACCAAGGCCAGCTGCAATGTGTCCCTTATTCTTGCTCTATACCC ACCGGGCTCGGACGAGGATTCATTGAGGTTGAAGAGGATGGTATTAGCAGCAGTTACTTCCCATTCATAGTCGCGGAGGAAGACGTTTGTTTGGAGATCT GTACGTTAGAAAACGCCTTGGAATTTTTCGAAACAGATTTAGACGGCGACTTAGGGGAGGGCGGTGGAAAAATGGAAGCTAAAAATCAAGCGATGGAATT CATTCACGAAATGGGCTGGCTTTTGCACAGAATACAGTCGAAGTCTAGATTGAATGACATGGATCCTAACGTCGATAGGTTCCCTATAAGTAGGATGAAA TGGCTAATGGACTTCTCCATGGACCATGAATGGTGTGCTGTAGTGAGAACACTATTGAACGTAGTTGTTCGTGACGGTATTGTCGATTTAGGAGGAGAAT ACAGCTCTCTGAATAACGCTCTGGCCGAAATGGGTGTCCTTCACAGAGCCGTGAGGAGGAATTCTAGATCCTTAGTTGAGTTCCTTCTGAAATATGCTCC TGAGAACGACGATGAGTTCCTGTTTCGGCCTGATATGGCTGGCCCTGGAGGCTTGACTCCTCTTCATATAGCTGCTGGTAAAGATGGCTCTGAAGATATT CTGGATGCATTAACTAATGATCCCAAAATGGTTGGAGTCGAAGCATGGAAGAATTCTCGTGACAGTACGGGGTTCACGCCAGAGGACTATGCTCGCTTGC GCGGACACTACTCTTACATCCACCTAGTACAGAGGAAGATCAACCGGAAACTGTCAGAAGGCTCGGGACACGTGGTGCTAGACATTCCAGAAAACGAGAA GCAAGACGAGGCTCTGAGCTCAGCATTGGAGATTATGCAGTCAGCGTTGAAGAAACCATCGGCTAGCAGCAAAAGCTGCAAGCTATGCACAGGCAACAAG GTGGCGTATGGGGTGGCCTCATCCAAGAGGTCTCTGCTGTACCGGCCTGCGATGCTGTCGATGGTTGCTGTGGCAGCGGTTTGCGTGTGTGTGGCACTTC TGTTCAAGAGCTGTCCCGAGGTTGTGTATGTGCTGAGTCCGTTCAGGTGGGAGGAGTTGGAGTACGGGACCAGCTAA
AA sequence Show only first row Show all	>Lus10038043 pacid=23163718 polypeptide=Lus10038043 locus=Lus10038043.g ID=Lus10038043.BGIv1.0 annot-version=v1.0 MEARFGTEANHFYDMRAVGKRSMEWDLNDWKWDGDLFIARPLNAVVPSSSAAASAGMSKQFFPLNNTNNNSSNSSSSCSDEVGNLEMIEKGKRRRNKVID VEEDDSLMVNGHQEEEAATLSLKLGGHGGGEMVNWEGNSSGKKAKLTGGGGNNNNSSSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVANV MQRFCQQCSRRRKTNPEPGSNSNTVNDDQAGGYLLISLLRTLSNMHSSKSEKSTDQDLLSHLLRSLAGQTIEHGGRNLAGLLEGPKELINNGSLSGNPKQ AQLVHANGASLQTSSSMKSRMPNNFPSCSEVRDSNPRSLKMNNFDLNDAYIDSDDGTDDVERSPVPTNGGTSSLGCPSWAQQDSLQSSPPQMSGNSDSAS PQSPSSSNGDGQNRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAGWDELCCDLSTSLSRLLHTSYDSFWRTGWLF VMMEHQIAFAYNGQVVVDTSSPLRNTDCGKICSVKPIAVSAAGKVQFLIKGTNLSRSSTRILCAIEGKYMVQEDSDDLAHTEDIKDQGQLQCVPYSCSIP TGLGRGFIEVEEDGISSSYFPFIVAEEDVCLEICTLENALEFFETDLDGDLGEGGGKMEAKNQAMEFIHEMGWLLHRIQSKSRLNDMDPNVDRFPISRMK WLMDFSMDHEWCAVVRTLLNVVVRDGIVDLGGEYSSLNNALAEMGVLHRAVRRNSRSLVEFLLKYAPENDDEFLFRPDMAGPGGLTPLHIAAGKDGSEDI LDALTNDPKMVGVEAWKNSRDSTGFTPEDYARLRGHYSYIHLVQRKINRKLSEGSGHVVLDIPENEKQDEALSSALEIMQSALKKPSASSKSCKLCTGNK VAYGVASSKRSLLYRPAMLSMVAVAAVCVCVALLFKSCPEVVYVLSPFRWEELEYGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10038043 [exp]	0	1
AT1G04200			unknown protein		Lus10039377 [exp]	3.2	0.8207
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	6.9	0.7763
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	7.3	0.7841
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002377 [exp]	8.7	0.7144
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	9.8	0.7629
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10042889 [exp]	10.5	0.7393
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	13.9	0.7580
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	17.3	0.7735
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	17.7	0.7808
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	21.2	0.7283

Compare expression of checked genes

Lus10038043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.