Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17390 729 / 0 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT4G01850 726 / 0 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT1G02500 726 / 0 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) AT2G36880 710 / 0 MAT3 methionine adenosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009985 [exp] 777 / 0 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10010070 [exp] 760 / 0 AT4G01850 739 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Lus10004522 [exp] 758 / 0 AT3G17390 739 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10023007 [exp] 707 / 0 AT2G36880 728 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10013828 [exp] 704 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10001395 [exp] 703 / 0 AT2G36880 723 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10026541 [exp] 468 / 1e-166 AT2G36880 474 / 5e-169 methionine adenosyltransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114700 [exp] 738 / 0 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.002G189200 [exp] 737 / 0 AT4G01850 741 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.008G099300 [exp] 735 / 0 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.013G004100 [exp] 733 / 0 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.010G153500 [exp] 730 / 0 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.006G123200 [exp] 706 / 0 AT2G36880 716 / 0.0 methionine adenosyltransferase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02772 [flax] [poplar] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [flax] [poplar] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain PF00438 [flax] [poplar] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038044 pacid=23163908 polypeptide=Lus10038044 locus=Lus10038044.g ID=Lus10038044.BGIv1.0 annot-version=v1.0 ATGGAGACCTTCCTATTCACATCTGAGTCTGTGAACGAGGGACACCCAGACAAGCTCTGCGACCAGATCTCCGACGCAGTCCTTGACGCATGCCTAGAGC AAGACCCTGACAGCAAGGTAGCATGCGAGACTTGCACCAAGACCAACATGGTCATGGTATTCGGAGAGATCACAACCAAGGCCGAGGTCGACTATGAGAA GATCGTCCGCGACACCTGCCGCAACATCGGATTCGTCTCCGACGATGTTGGACTTGACGCTGACAACTGCAAGGTCCTGGTCAACATTGAGCAGCAGAGC CCTGACATCGCTCAAGGTGTCCACGGCCACTTCACCAAGCGCCCCGAGGATATCGGTGCTGGTGACCAAGGTCACATGTTCGGTTATGCCACGGATGAGA CACCAGAGCTCATGCCTTTGACCCATGTCCTAGCCACCAAGCTCGGAGCTAAACTCACCGAGGTCAGGAAGAACGGCACCTGCCCGTGGCTGAGACCCGA TGGCAAGACCCAGGTCACCGTCGAGTACTTCAACGAGAAGGGAGCCATGGTTCCGGTCCGTGTCCACACCGTCCTCATCTCCACCCAGCACGATGAGACC GTCACCAACGACGAGATTGCCGCTGACCTGAAGGAGCACGTCATCAAGCCAGTGATCCCCGAGAAGTACCTTGACGAGAAGACCATCTTCCACCTGAACC CATCAGGCCGATTCGTCATTGGAGGACCCCATGGTGACGCTGGTCTCACTGGCCGCAAGATCATCATCGACACCTACGGAGGGTGGGGAGCACATGGTGG CGGTGCCTTCTCTGGAAAGGACCCAACAAAAGTCGACAGGAGCGGTGCTTACATCGTCAGGCAGGCTGCCAAGAGTATCGTTGCTAACGGTCTCGCTCGC AGGTGCATTGTCCAGGTCTCCTACGCCATCGGTGTCCCCGAGCCATTGTCCGTCTTCGTCGACTCGTACGGAACGGGAAAGATCCCCGACAAGGATATTC TTGCTCTGGTGAAGGAGAACTTCGACTTCAGGCCCGGGATGATGACCATCAACCTTGACTTGAAGAGGGGTGGAAATGGAAGGTACTTGAAGACTGCTGC TTATGGACACTTTGGAAGGGACGACCCTGACTTCACCTGGGAAGTTGTCAAGCCTCTCAAGGCTGCTGCTGACAAGGCTTAA
AA sequence Show only first row Show all	>Lus10038044 pacid=23163908 polypeptide=Lus10038044 locus=Lus10038044.g ID=Lus10038044.BGIv1.0 annot-version=v1.0 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKAEVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQS PDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYFNEKGAMVPVRVHTVLISTQHDET VTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKDILALVKENFDFRPGMMTINLDLKRGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKAAADKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	1.7	0.9712
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	2.0	0.9635
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	2.8	0.9681
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	3.9	0.9636
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	4.1	0.9280
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	4.5	0.9548
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10012458 [exp]	4.9	0.9229
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	6.4	0.9054
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	7.3	0.9269
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	8.0	0.9430

Compare expression of checked genes

Lus10038044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.