Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01860 1231 / 0 Transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 55 / 2e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 54 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56130 52 / 2e-06 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 51 / 3e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49180 50 / 1e-05 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 49 / 2e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G18060 49 / 3e-05 transducin family protein / WD-40 repeat family protein (.1) AT2G22040 46 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009986 [exp] 2401 / 0 AT4G01860 1344 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10002860 [exp] 57 / 6e-08 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 56 / 9e-08 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027113 [exp] 55 / 3e-07 AT5G56130 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 54 / 5e-07 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 53 / 1e-06 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 53 / 1e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10008356 [exp] 52 / 1e-06 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 52 / 2e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189400 [exp] 1485 / 0 AT4G01860 1397 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 59 / 1e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 57 / 3e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 53 / 7e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 50 / 5e-06 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G470900 [exp] 50 / 8e-06 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G049200 [exp] 49 / 3e-05 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G156900 [exp] 48 / 5e-05 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.015G041200 [exp] 47 / 0.0001 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.006G045800 [exp] 46 / 0.0002 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038045 pacid=23163892 polypeptide=Lus10038045 locus=Lus10038045.g ID=Lus10038045.BGIv1.0 annot-version=v1.0 ATGACGGGACGCCGGCAAACAATCTGCGGGCAGTACCTCGGAGAAGTTTCAGCTTTATCATTCCTCCATATACCTCAGGAATTTTCTTCTCTTCCTCTGC TCCTCGCTGGTTCAGGTTCCCAGCTTCTGCTGTACAATTTAGAAGTGGGAAGCTTGATCAAAGCTTTTCAAGTGTTCGAAGGGATTCGCATCCACGGAAT TGCCTGTTCTGATGGATTTTCAGCTCCGGCTTCTAAAAACCTCAGTTTTCGAGTTTCTGTGTTTGGCGAGAAGAGAGTGAAGCTGTTCAATTTGAATGTA GCATTGGAATCAGAGCTGCTTGTGGATTTAGCTTTAGAGCATTCTTTGCCGAGGTTCAGTCATTGGATACTGGATGTTTCCTTCTTGAAGGGCAATTGTA TTGCTGTGGGATGCAGTGATAACTCGGTTCATGTACGGGATATAACCAATTCGAGTCCAATTGTCGATGTTCAGTCTCCCGATAAATGCCTTCTATATTC AATGCGGCTATGGGGGGAAACTCTGGACACTCTACGGATTGCTTCTGGAACTATATTCAATGAGGACGAAGGAAACTTCGTGAAGCTCAGAGATCCTTAT GAAATCTGTTTTGTTGGCTGTATTTTTGGTCTATACCATGGAGGACAGATCATCATTTGGAGGGTGGTTCACCAACAAACTTATAAGGCATCTCATATTA GTAGACTTATAGGGCACGAAGGATCAATATTCCGGATAGCATGGTCCTCTGATGGGTCCAAGCTGGTTTCTGTATCTGATGATCGCAGTGCCCGTATCTG GCGAGTAAGTTCTGCCGGAGAGGGAGATCCTGTCACTCGAGAGGAGTTGGCTGGCCCTGTTCTCTATGGTCATAATGCTAGAGTTTGGGACTGCTGTACC TTTGGTTCATTAATTGTCACAGCAGGCGAGGATTGCACTTGTCGTGTATGGGACTTGGACGGTAAACAACTGAAGATGATCAAAGAGCATATAGGCAGAG GAGTATGGAGATGCTTATATGACCCGGCCTCATCGGTCCTCGTTACTGCTGGATTTGACTCTGCAGTCAAAGTGCACCAGCTACCTTCTTCATTGCCTAA GATTTTGGAAGGAAAAAATGATCCCGAACTGCCCATGGACTATAAAGTATCCACTGGTCAGATTCCAAGTTTGTCTGAGCATGTCGGTCTCATGGACAGT AAAAGTGAGTATATCCGAAACATGCATTTGGCTTCTGAGGACACCATATATGTTGCCACAAACCATGGCTATTTGTATCATGCCAAAATTTCAGACAGGG AGTACAAATGGACTAAACTTGTCCAGGTCAGTCAAGAGGTGCCAATTGTTTGTATGGATTTGCTGTCAAAAAAGTTGCCCAAACCTTCTTGTGGTCTTGA TGACTGGGTTGCTTTAGGAGATGGGAAAGGAAACATGACTGTTGTTAGAGTTATTGGTGATATATCCTCTCCTGAAGTTGGCGTCACCTACAATTGGTCA GCTGGAAAAGAACGACAACTCCTCGGAACTTATTGGTGCAGGTCTTTGGGATCTAGGTTCATTTTCACTGCTGATCCTAGAGGCAACTTGCGCCTATGGA GCTTAAATGATCAATTATCATCTGTGAGCCAGCCTTCTCAGATTAATTATACTGCGTCTCTTATTGGAGAATTCACGTCATCGTTTGGTATCCGGATAAT GTGCCTAGATGCATCATCAAAAGATGAGGTATTGCTATGTGGGGATCTCCGTGGCAATCTCCTTCTGTTTCCTCTGTCAAATGACACATTGATGCAGACA TCAAATGGACAAGATATAAAAGTAACTCCAACGAGCTACTTTAAAGGTGCTCATGGAATATCGAGTGTATCCAGCTTATCTATGACTAGATTAAGTTCCA GCGAGATTGAAATACGTACGAGTGGAGCAGATGGTTGCATATGCTTTTTTGAATACGACACATGTCAGCAAAACCTAGAATTTATAGGGATGAAACAGAT CAAAGAATTGAGTTTAATTCAATCTGCGCTTTCTGATCCTGGTTCGGCCAATGACCAATCCAACTGCAGCCATGCAGTTGGGTTTGCATCTACAGATTTC ATAATCTGGAACTTAACTACAGAAGCAAAGGTCGTGCAAATTCCATGCGGTGGTTGGCGACGTCCGCATTCTTATTTTATTGGTGATGTGCCAGAGGTGA AGAACTGCTTTGCATATGTTAAGGATGAGCTGATATACATTCACCGGCACTGGGTACACGAGAAGAAGATATATCCCCAGAACCTGCGTGTCCAGTTTCA TGGGCGAGAGATTCATACCCTTTGTTTTATATCCTTCCAGTCAAATGCAAAGCATAGTCCTTTACCAGATTCAAATTGGATAGCTACTGGTTCTGAAGAT GGAACTGTAAGGTTGACAAGGTATATTCCAGGAGTAGAAAGTTGGTCTATGTCAAAATTGCTGGGTGAGCATGTCAGTGGGTCTGCCGTGAGAACAATAT GCACAGTGGGGAAAGTACATACAGTTACATCAAAATCAGCAACTGATCAAAAAAATGAACAAAGTGAGGACAGGGAAAAACCATTTTTGCTGATCTCTGT AGGGGCAAAGCGGGTCCTCACCTCTTGGCTTCTGAGGGATCGAGGGTCTAATGAGAAAGAGAATTCTCTTGAAGAAGAAGACCTAAAAGTCAGCGATGAA CCTATGCCGTCTTCAGGAGTGAACTCTTCCATGTCATTTAAGTGGCTTTCTACTGATATGCCAGCAAGAAATTCCAGTACTCAAGGAAAACGAAAACTTA CTCATAATAAATCAGGAGTTAGAGCAGAAAGCAAAGCAAGTGTGGAAGTTGATTCAGTAACAACATCTACCGTTCATGGAAATGATGAGACGGAATCGAA AATTTGCTCTGATGACAAATGTGAAGACGACTGGAGATACATGGCTGTCACTGCATTCCTGGTGAAGGATACCCGTTCCAAGTTGACCATCTGCTTTGTT CTTGTTTCTTGTTCTGATGCTACACTTGTTCTTCGAGCACTCATCTTACCTCATCGATTATGGTTTGATGTCGGAATGTTGGTTCCTTTGAGATCGCCAG TATTGTCCTTGCAGCATGTCGTCGTCCCACTGCAGCTTCCTTGCAATGGGAATGTATATATTAGAAATGCATATGTTGCAATTAGTGGAGCAACTGATGG AAGCATTGCCTTTTGGGATCTAACGGACAGCGTTGAGGCTTTCGTGCACCAATTATCGTCAATTGATGCGGAAAAGCTGATAAATTGCCGAACAAGGCCA CGAACTGGAAGAGGAAGTCAAGGCGGACGGTGGTGGAGATCGTTGACCACTAGAGTGTCTAACAAAGCACATGAGACGACCAAAGACGATATGGAAGGTG ACCCCTCTGATGCAGAGTCACATTCTAGCTATCCATCAGCCTCCGGTCAAGAGATATCTCCTCTGCATATTCTACGTGGGGTCCACCAATCAGGGGTGAA CTGCCTCCGCGTCTCTGACATGCTTCCTGGTCGAATGTCTGACGATAGTTTTGAGTTTAGTCTAATAAGCGGCGGGGATGATCAAGCACTTCACTGCCTT AAGTTCTGTGTATCACTTGAAACAACTTCCACCGATTCGAATGGAGTGATTGCAGGCATGAAAATATCGCCCGATGATTCCCACCAAGCGCTGATGGAAC CAGATGAGGACATCCAAGGCCGAATCAAGCAGCCTAACGTCAGATTCTTGGATCAGCACAAGATCAACTCTGCCCATAGCTCTGCTGTCAAAGGTGTTTG GACAGACGGGACATGGGTTTTCTCCACCGGTCTGGATCAGCGAGTCAGATGCTGGCTTCTGGAAGATAACTGTAAACTAACTGAACAAAGTCATTTGATC ATTAGTGTTCCGGAGCCAGAAGCATTGGATGCTAGAGCCTGCATCAACAATGCCTATCGAATTGCAGTTGCGGGAAGGGGGATGCAGACCGTCGAGTTCT ATCCGAATTAG
AA sequence Show only first row Show all	>Lus10038045 pacid=23163892 polypeptide=Lus10038045 locus=Lus10038045.g ID=Lus10038045.BGIv1.0 annot-version=v1.0 MTGRRQTICGQYLGEVSALSFLHIPQEFSSLPLLLAGSGSQLLLYNLEVGSLIKAFQVFEGIRIHGIACSDGFSAPASKNLSFRVSVFGEKRVKLFNLNV ALESELLVDLALEHSLPRFSHWILDVSFLKGNCIAVGCSDNSVHVRDITNSSPIVDVQSPDKCLLYSMRLWGETLDTLRIASGTIFNEDEGNFVKLRDPY EICFVGCIFGLYHGGQIIIWRVVHQQTYKASHISRLIGHEGSIFRIAWSSDGSKLVSVSDDRSARIWRVSSAGEGDPVTREELAGPVLYGHNARVWDCCT FGSLIVTAGEDCTCRVWDLDGKQLKMIKEHIGRGVWRCLYDPASSVLVTAGFDSAVKVHQLPSSLPKILEGKNDPELPMDYKVSTGQIPSLSEHVGLMDS KSEYIRNMHLASEDTIYVATNHGYLYHAKISDREYKWTKLVQVSQEVPIVCMDLLSKKLPKPSCGLDDWVALGDGKGNMTVVRVIGDISSPEVGVTYNWS AGKERQLLGTYWCRSLGSRFIFTADPRGNLRLWSLNDQLSSVSQPSQINYTASLIGEFTSSFGIRIMCLDASSKDEVLLCGDLRGNLLLFPLSNDTLMQT SNGQDIKVTPTSYFKGAHGISSVSSLSMTRLSSSEIEIRTSGADGCICFFEYDTCQQNLEFIGMKQIKELSLIQSALSDPGSANDQSNCSHAVGFASTDF IIWNLTTEAKVVQIPCGGWRRPHSYFIGDVPEVKNCFAYVKDELIYIHRHWVHEKKIYPQNLRVQFHGREIHTLCFISFQSNAKHSPLPDSNWIATGSED GTVRLTRYIPGVESWSMSKLLGEHVSGSAVRTICTVGKVHTVTSKSATDQKNEQSEDREKPFLLISVGAKRVLTSWLLRDRGSNEKENSLEEEDLKVSDE PMPSSGVNSSMSFKWLSTDMPARNSSTQGKRKLTHNKSGVRAESKASVEVDSVTTSTVHGNDETESKICSDDKCEDDWRYMAVTAFLVKDTRSKLTICFV LVSCSDATLVLRALILPHRLWFDVGMLVPLRSPVLSLQHVVVPLQLPCNGNVYIRNAYVAISGATDGSIAFWDLTDSVEAFVHQLSSIDAEKLINCRTRP RTGRGSQGGRWWRSLTTRVSNKAHETTKDDMEGDPSDAESHSSYPSASGQEISPLHILRGVHQSGVNCLRVSDMLPGRMSDDSFEFSLISGGDDQALHCL KFCVSLETTSTDSNGVIAGMKISPDDSHQALMEPDEDIQGRIKQPNVRFLDQHKINSAHSSAVKGVWTDGTWVFSTGLDQRVRCWLLEDNCKLTEQSHLI ISVPEPEALDARACINNAYRIAVAGRGMQTVEFYPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	0	1
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	1.0	0.9375
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	1.4	0.9345
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	1.7	0.9275
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	2.2	0.9240
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	2.8	0.9269
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	6.5	0.8974
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	7.3	0.9045
AT3G49410			Transcription factor IIIC, sub...		Lus10029672 [exp]	8.4	0.8627
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	9.2	0.8671
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10000108 [exp]	11.0	0.8774

Compare expression of checked genes

Lus10038045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.