Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43130 145 / 2e-39 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2) AT1G27720 123 / 8e-32 TAF4b TBP-associated factor 4B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008297 [exp] 264 / 3e-82 AT5G43130 448 / 3e-144 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10007763 [exp] 245 / 4e-75 AT5G43130 576 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10033265 [exp] 209 / 3e-62 AT5G43130 404 / 1e-127 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10018701 [exp] 209 / 6e-62 AT5G43130 596 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119900 [exp] 173 / 4e-49 AT5G43130 634 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Potri.014G018000 [exp] 166 / 1e-46 AT5G43130 605 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF05236 [flax] [poplar] TAF4 Transcription initiation factor TFIID component TAF4 family
Representative CDS sequence Show only first row Show all	>Lus10038047 pacid=23163808 polypeptide=Lus10038047 locus=Lus10038047.g ID=Lus10038047.BGIv1.0 annot-version=v1.0 ATGGCTTTCTCTCGGTTAGCAGTGGTCAAGTGTGGTGTGAAGAATGTTAGCAGTCATGTTGAGAAATGCCTGTCCTTGAGTGTGGAGGAAAGGATGCGCC GTTTGATTCGTAACATGGTTAGAATGTCAAAACAGAGGATTGACTTGGAGAAATCCGGACACAGGACAGAGGTTACATCTGATGTTCGGCGGCAACTCAT GGCAATGAACCAGCAAGCCAAGTCGGAATGGGCGAAAGAGCAGGCAGAAGGAGAAAAACTCTGGAGAGTAAATGAAGAACCGAACAAAGCGGAGGAGGAT GCCGAAATGAGAAGAACTGCTGCAAATGTTGCTGTCCGAGCTTCTGTTGGCGGAGACGACATGCTGTCGAAATGGAAACTCATGGCTGAGCAAGCTCGGC AGAATCGAGATCCAGCATTGTCTTTTCAATCGGCGTCAGATGGAAGCTATGAGATTCAGATATTGGCTGGAAGGAAGAACAATCAAGATGGACAAACGAA CTCTGGTTCCGCATCCTGTGGGAGGAAATTCGGGAGGGAGAACGGAGCAGCAACAGCACAGTTGAGGGAGGACCGGACTTTGTCTATCAAGGATTTGATT GCGGTGATGGAACGAGAGCATCAACCGTCCAGTTATATGTCGAGTTGTAAACTGAATGAGAAGATACGTCGACTCTGCCACCCGAGTGATATCAAGGAAC TGTCGGACGATGTGAGCTGCGAATTCAAGGAAATCATAACGTACAGAATCATAAAATGA
AA sequence Show only first row Show all	>Lus10038047 pacid=23163808 polypeptide=Lus10038047 locus=Lus10038047.g ID=Lus10038047.BGIv1.0 annot-version=v1.0 MAFSRLAVVKCGVKNVSSHVEKCLSLSVEERMRRLIRNMVRMSKQRIDLEKSGHRTEVTSDVRRQLMAMNQQAKSEWAKEQAEGEKLWRVNEEPNKAEED AEMRRTAANVAVRASVGGDDMLSKWKLMAEQARQNRDPALSFQSASDGSYEIQILAGRKNNQDGQTNSGSASCGRKFGRENGAATAQLREDRTLSIKDLI AVMEREHQPSSYMSSCKLNEKIRRLCHPSDIKELSDDVSCEFKEIITYRIIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10038047 [exp]	0	1

Compare expression of checked genes

Lus10038047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.