Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62240 545 / 0 C2H2ZnF RING/U-box superfamily protein (.1) AT2G47090 488 / 2e-162 C2H2ZnF zinc ion binding;nucleic acid binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009987 [exp] 1139 / 0 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1) Lus10010069 [exp] 828 / 0 AT3G62240 810 / 0.0 RING/U-box superfamily protein (.1) Lus10004521 [exp] 733 / 0 AT3G62240 763 / 0.0 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189700 [exp] 620 / 0 AT3G62240 818 / 0.0 RING/U-box superfamily protein (.1) Potri.014G114900 [exp] 614 / 0 AT3G62240 830 / 0.0 RING/U-box superfamily protein (.1) Potri.013G004200 [exp] 515 / 1e-172 AT3G62240 501 / 3e-166 RING/U-box superfamily protein (.1) Potri.005G004600 [exp] 435 / 2e-142 AT3G62240 497 / 2e-165 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038048 pacid=23163867 polypeptide=Lus10038048 locus=Lus10038048.g ID=Lus10038048.BGIv1.0 annot-version=v1.0 ATGGACGATAGCTGCGCTGTTTGCGCTGACAACTTGGAATGGGTGGCTTATGGCCCCTGTGGCCATCGCGACGTTTGCTCCACTTGCGTCGTCCGCCTCC GATTCATCTGTCAAGATCAACGTTGCTGCATCTGCAAGACGGAATCAGATGTCGTTTTCGTCACCAAGGCTATGGGAGACTACACGAGGATGATCAATGA CTTCTCACTCCTGCCGTCTGGACCCAAGGAGGGTAAGATTGGGTCGTACTGGTACCATGAGGATACACATGCATTTTTTGATGACGTTGATCACTACAAG ATGATTAAGGCAATGTGCAGACTCTCGTGTAGCGAATGTGACAAAATGGATGAGGAAACCAATGATGTTGCAAAGCGTCATGCCAAGTATAGGAACGTTG AGCAGCTCAAGGGTCATTTGTTTCATGTTCATAAGTTGGTTATGTGCAGCCTATGTTTGGAAGGAAGGAAGGTATTTATTTGTGAGCAAAAGCTGTTTAC AAGGTCACAGCTTAGTCAGCACGTCAACACAGGGGACTCTGAGGTTGATGGCAGTGAAAGTGAAAGAGGTGGCTTTATGGGTCATCCCATTTGTGAATTT TGCAAGACGCCGTTCTATGGTGATAATGAGTTATATACACATATGTCTAGAGACCATTATACCTGTCATATATGTCAAAGGCAGCGTCCAGGACAATATG AATATTACAAAAACTATGATGATCTAGAGATGCACTTCCGTCACGACCATTTTCTCTGTGAGGATGAGTCGTGTCTTGCCAAAAAGTTTGTTGTTTTTCA AGGCGAAGCAGAAATGAAGAGGCATAATACAATTGAGCATGCTGGGCGTATGTCGCGTTCAAAGCGTAATGCAGCTCTACAGGCATGTTTCTGTTCTTAT CTCTACTTAATGCAGTTTAACGACTATATTCAAATACCAACCAGCTTTCAGTTTCATCGTGAACAAGATCCTCGTACTCGTCGTGGACGTGGGAGGGGAC TTGCATTTCGAGATGACTATGCTGATGATCAGCTCTCTGTGGCAATTCAAGCAAGTCTCGAGTCTACTGGTACAGAGGTTTCCGGTCGTGGAGATCGTAA CGATATAGGTCCTCTCACCCTCACTCGGCCTTTAGAATCATTAGCTTTATCGGAATCTACCCCGACAAGGTATCGTGAAGCAATAGCAAACAGTTCGTAT GCAGTTCTGCAAGAATCTGCCTTTCCTCCCCTTCCCGTGGTTCCCAAGAGTACTCAGAAGAAACGAAAGAACAAAAAAGCAACTGGCAGCCATCCAGCAC AGGAATGGCCGGAAACAAGTCGTGCATCTTCCTCCAGTAGTTGGTCACAATGGCCTGCTATAAATACTGCAACGTCAAGCTCACAGAATACTTACAGTGC GAGTCCTTCTCCTGCTCTACCCATATCAATTCCTGGATATTCATCTGGTCGAACGCCCTCGATCATGCCTAACGATGTTCAGAATGCAAATAAATCCTTG GTGGAAAAAGTACGAGAAGCCCTTGATCACGATGAGGCCAAGTATGCTTCTTTCAAAGAAATATCCGGCCAGTATCGTCAGGGTACAATAGACTCTGAAA TGTACTTGGCTCGTGTTCGGATTTTTGGATTATCGCATCTCGTTCTTGATTTAGCTAGACTTTGTCCTGATCCGGCAAAGCAGAAGGAGTTGGTTGACAC ATACAACGCCAGTTTGGGAAGCAAGGGCCAGAATGGAAAGGGTTCAGGTAAAGCTGCGAAAAAGGGCAAGGGAATAGCTTCTGGAGGTAGCAGCTCAGGG GATAGATTAGCAGACAACGTTATCAACACTGTCCGGACACTACAGCCACGTTACAATCCAGCGGAGGACGACGAGGTCGAAGTGTTATCTAAGAATGGCT ATCGGAAGCATGCCAAAGGCAAGTTGAGTCTAATGGCTGATCAACAACAAGGTTCAGCATTGCCCGGGCAACATGACTTGATTAGCCAGATCACAAGGGA TGCTGCGTTGGCTGGTGGTGGGAGTAAACAGAAGAAGAAAATCTCCAAGTTCCAGCGAGCGAGACTGGGCGATGGATCAATGGGTGGGATGTCGGATACC AGAAATTCGGAACCTGCTCCGGATCCGGGTCTAGTGATTGGAGAAGGTAGCAGCAGTAATGGAGTGTTGCCTGTTGGTGGGGTTTGGCGGAAAGGTGGAG GTAAGAAGCTTTTCGCATAG
AA sequence Show only first row Show all	>Lus10038048 pacid=23163867 polypeptide=Lus10038048 locus=Lus10038048.g ID=Lus10038048.BGIv1.0 annot-version=v1.0 MDDSCAVCADNLEWVAYGPCGHRDVCSTCVVRLRFICQDQRCCICKTESDVVFVTKAMGDYTRMINDFSLLPSGPKEGKIGSYWYHEDTHAFFDDVDHYK MIKAMCRLSCSECDKMDEETNDVAKRHAKYRNVEQLKGHLFHVHKLVMCSLCLEGRKVFICEQKLFTRSQLSQHVNTGDSEVDGSESERGGFMGHPICEF CKTPFYGDNELYTHMSRDHYTCHICQRQRPGQYEYYKNYDDLEMHFRHDHFLCEDESCLAKKFVVFQGEAEMKRHNTIEHAGRMSRSKRNAALQACFCSY LYLMQFNDYIQIPTSFQFHREQDPRTRRGRGRGLAFRDDYADDQLSVAIQASLESTGTEVSGRGDRNDIGPLTLTRPLESLALSESTPTRYREAIANSSY AVLQESAFPPLPVVPKSTQKKRKNKKATGSHPAQEWPETSRASSSSSWSQWPAINTATSSSQNTYSASPSPALPISIPGYSSGRTPSIMPNDVQNANKSL VEKVREALDHDEAKYASFKEISGQYRQGTIDSEMYLARVRIFGLSHLVLDLARLCPDPAKQKELVDTYNASLGSKGQNGKGSGKAAKKGKGIASGGSSSG DRLADNVINTVRTLQPRYNPAEDDEVEVLSKNGYRKHAKGKLSLMADQQQGSALPGQHDLISQITRDAALAGGGSKQKKKISKFQRARLGDGSMGGMSDT RNSEPAPDPGLVIGEGSSSNGVLPVGGVWRKGGGKKLFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	0	1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	2.4	0.9337
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	3.9	0.9169
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	4.5	0.9123
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	6.0	0.9003
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	6.3	0.9165
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	9.5	0.9037
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	11.0	0.8572
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10026973 [exp]	12.4	0.8798
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10031581 [exp]	12.5	0.8798
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	12.6	0.9032

Compare expression of checked genes

Lus10038048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.