Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 1808 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1791 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1785 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 1738 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 1654 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G01820 1652 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G18050 1588 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 1518 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT4G25960 1058 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1041 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009988 [exp] 2350 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 1969 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 1758 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 1727 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038050 [exp] 1657 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010074 [exp] 1550 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 1538 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004583 [exp] 1500 / 0 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10004520 [exp] 1255 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 1955 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1908 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1902 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1843 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113000 [exp] 1780 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1778 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 1690 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 1636 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.003G094400 [exp] 1054 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G081100 [exp] 1050 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10038049 pacid=23163645 polypeptide=Lus10038049 locus=Lus10038049.g ID=Lus10038049.BGIv1.0 annot-version=v1.0 ATGGAGGAGGATGGAAGTAACTCTAATAACAACAACAATGCCAATGAGCCATCCACATCAGCAATCCATGAGAAGGAGGAAGAAAAGAAGGACAAAGGGA AGAAGGAGGAGAGTGGGAAAACAATTCCATTCCACAAGCTATTCTCCTTTGCTGACTCCACTGATGTTTTGCTGATGATTTTCGGAACAATTGGTGCTGT TGGCAATGGTGTTGCTATGCCCTTAATGACCATTCTCTTTGGCCAGCTCACTGATTCCTTCGGTCAGAACCAGAACAACTCTGATGTTGTCAAAGTAGTT TCCGAGGTGGCTCTCAAGTTTGTCTATCTGGCAATTGGAACTGGTGTGCTAGCTTTTCTACAGGTTTCCTGTTGGATGGTTACTGGGGAGAGACAAGCAG CTAGGATAAGAGGTTTGTATTTGAAAACCATTTTGAGACAAGACATTGCATTTTTCGATAAGGAGACAAACACCGGAGAGGTCATCGGTAGAATGTCCGG TGACACTGTTCTTATTCAAGACGCCATGGGCGAAAAGGTTGGGAAGTTTCTTCAGCTGTTTTCAACATTCATAGGAGGGTTTGTGATAGCATTCATCAAA GGATGGCTTCTTACCCTTGTCATGCTCAGCTCAATTCCATTGCTAGTGATCACCGGCGGTGTCATTTCTACGTTGGTTGCTAAGATGTCGTCCACCGGAC AAACAGCGTACGCAAAAGCAGCAAGCGTTGTGGAGCAGACGATCGGATCCATTCGAATAGTTGCATCGTTTACAGGGGAGAAGCAGTCGATAGAGAACTA CAAGAAGCATCTGGTTACTGCTTACAAATCGGGTGTTCACGAAGGTTTAGCTACCGGACTAGGGCTCGGAGTCCTTATGTTCATCATGTTTTGTAGCTAT GCTCTAGCCATATGGTTTGGTGGTAAGATGATTTTGGAGAAAGGCTACAGTGGTGGTGAAGTCCTCAATGTCATCATTGCTGTCTTAACCGGTTCCATGT CACTGGGGCAGGCTTCACCTTCCCTGAGTGCATTTGCAGCCGGTCAAGCAGCAGCATACAAAATGTTCGAGACCATCAACAGGAAGCCGGAGATTGATGC TTACGACCCCAGAGGGAAGGTAATGGAAGATGTTCGAGGGGACATCGAGTTGAAAGATGTCTACTTTAGCTATCCGGCAAGACCAGATGAGCAGATATTC AATGGATTCTCTCTTAGGATTGAGAATGGAACAACTGTGGCTTTGGTTGGTCAAAGTGGGAGTGGGAAGTCAACTGTGATCAGCTTGATCGAGAGGTTCT ACGACCCACGAGCTGGCGAAGTCCTCATCGATGGGATTAACCTCAAGGAGCTTCAGCTCAAATGGATCAGAGGCAAAATCGGACTTGTTAGCCAAGAACC TGCATTGTTCACATCAAGCATTAAGGATAATATTGCATATGGGAAAGATGGCGCAACTCTTGAAGAGATAAGACATGCTTCTGAGCTTGCTAATGCTGCT AAGTTCATTGATAAACTGCCTCAGGGACTGGATACCATGGTTGGTGAGCATGGAACACAACTTTCAGGAGGACAGAAGCAGAGGATTGCAATAGCAAGAG CAATTCTGAAGAACCCTAGAATTCTGCTTCTAGATGAAGCAACAAGTGCACTTGATGCCGAATCCGAAAAGGTTGTTCAGGAGGCATTGGATAGGATTAT GGGGAACCGAACAACCGTCGTCGTTGCTCATCGGCTGAGCACCGTCAAGAATGCTGACATGATCGCTGTCATCCACCGCGGGAAGATGGTCGAGAAAGGA TCTCACAATGAACTTCTGAAAGATCCTGAAGGAGCATACTCTCAGCTGATTAGCTTGCAAGAGATCCACAGAGTTTCAGGACATGATACTGAAGACCATC ATCGTCAAGATTCCTTCCGGCAATCCAGCCAACGGATTTCGCTCCCTCGATCTCTGAGTCGGGGATCGTCCGGTGGCGGCGTTGGCAGCAGCAGCCGCCG GTCTTTCTCTGTCTCGTTCGGAATTCCAACCGGAATGAATGTCACAGGCAGCACGGTGGAGGATGAAGAAGCAGCAGGTACTCCACCAGCAAAAGACGCA CCGAAAGTGTCTATCAAGCGCTTAGCGTATATGAACAAGCCGGAGATACCGGTGCTGTTTTTCGGAAGCATTGCAGCCATAGCAAACGGTGTAATCTTCC CGATTTTCGGCATCCTAATCTCGCAAGCGATCAAGTCGTTCTACGAGCCGCCTTCCGAGTTGCGAAAGGACACAAAGTTTTGGGCTTTGATGTTCATGAT TCTCGGCATCGTGTCGCTGATCGTGTATCCATCACAGACATACTTGTTTGGCGTGGCGGGGAGTAGGTTGATCCAGAGGATCCGGTCGATCTGCTTCGAG AAAGTGGTTCGCATGGAAGTGAGCTGGTTCGACGAGCCTGAGAACTCGAGTGGTGCGGTTGGTGCTAGGCTCTCGGCTGATGCGGCCACCGTCAGGGCCT TAGTTGGTGACAAGCTTGGACAGACTGTTCAGAACATTGCCTCTATTGTTGCTGGTTTGGTCATTGCCTTCACTGCAAGTTGGCAACTTGCCTTGATTAT TCTTGCCTTGGTGCCATTGATTGGGCTCAATGGCTACGTCCAACTCAAGTTCATGAAAGGATTCAGTGCAGATGCAAAGATGATGTATGAAGAGGCAAGT CAGGTGGCAAATGATGCAGTTGGAAGCATAAGAACAGTTGCATCTTTCTGTTCAGAAGAGAAAGTGATGGAGCTGTATAGGAAGAAGTGTGATGGACCAA GGAAGACTGGAATTAGGGAAGGACTAATAAGTGGGATTGGATTTGGGGTCTCATTCTTTCTGCTGTTTTCCTTCTATGCAACCAGCTTCTATGCAGGTGC TCAGCTTGTCAAGCGTGGCAAAGCAACCTTCTCCGATGTTTTCCAGGTTTTCTTTGCACTCACAATGGCATCAATTGCAGTGTCTCAATCAAGCTCATTT GGTCCTGATTCATCCAAGGCCAAATCAGCAGTGGCTTCCATTTTCTCAATCATAGACAGGAAATCGAAGATCGATCCCAGCAACGAAACGGGCACTACAT TAGCCACTGTTAAAGGAGACATTGAACTCAGACACGTTAGCTTTTGCTACCCTTCTAGGCCAGATGTTCAGATCTTCAGAGACCTAAGCTTAGCCATTCA TTCCGGCAAGACTGTTGCTCTGGTGGGAGAGAGTGGAAGTGGGAAGTCCACAGTCATTGCTTTGCTCCAAAGGTTTTACGATCCCGATTCGGGTAGGATT ACTCTCGATGGAGTTGAAATCCAGACCCTCAAGATCAAATGGCTGAGGCAACAAATGGGGCTTGTGAGCCAAGAACCCGCCTTGTTCAACGAGACGATTC GAGCCAATATTGCTTATGGGAAGGAAGGAGATGCATCCGAGTCCGAAATCCTTGCGGCATCAGGACTTGCTAATGCACACAAGTTTATCAGTGGCCTCCA ACAGGGATATGATACGATGGTAGGGGAGAGAGGCATCCAGTTATCCGGCGGCCAGAAGCAGAGGGTGGCCATCGCTCGCGCCATCATTAAGGAGCCGAAG ATTTTGCTGCTAGATGAGGCGACAAGTGCGTTGGATGCAGAGTCGGAGAAAGTGGTACAAGATGCTCTAGACAAAGTTATGGTGAACAGAACGACAGTTG TGGTAGCTCACCGGCTATCGACGATCAAGAACGCGGATGTGATCGCAGTGGTGAAGAACGGAGTGATTGTGGAGAAAGGAAGGCATGAAAGTTTGATCAA TATCAAAGATGGGTTCTATGCCTCTCTTGTTCAGCTTCACACTAGTGCCTCTACTTCCTAG
AA sequence Show only first row Show all	>Lus10038049 pacid=23163645 polypeptide=Lus10038049 locus=Lus10038049.g ID=Lus10038049.BGIv1.0 annot-version=v1.0 MEEDGSNSNNNNNANEPSTSAIHEKEEEKKDKGKKEESGKTIPFHKLFSFADSTDVLLMIFGTIGAVGNGVAMPLMTILFGQLTDSFGQNQNNSDVVKVV SEVALKFVYLAIGTGVLAFLQVSCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLFSTFIGGFVIAFIK GWLLTLVMLSSIPLLVITGGVISTLVAKMSSTGQTAYAKAASVVEQTIGSIRIVASFTGEKQSIENYKKHLVTAYKSGVHEGLATGLGLGVLMFIMFCSY ALAIWFGGKMILEKGYSGGEVLNVIIAVLTGSMSLGQASPSLSAFAAGQAAAYKMFETINRKPEIDAYDPRGKVMEDVRGDIELKDVYFSYPARPDEQIF NGFSLRIENGTTVALVGQSGSGKSTVISLIERFYDPRAGEVLIDGINLKELQLKWIRGKIGLVSQEPALFTSSIKDNIAYGKDGATLEEIRHASELANAA KFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESEKVVQEALDRIMGNRTTVVVAHRLSTVKNADMIAVIHRGKMVEKG SHNELLKDPEGAYSQLISLQEIHRVSGHDTEDHHRQDSFRQSSQRISLPRSLSRGSSGGGVGSSSRRSFSVSFGIPTGMNVTGSTVEDEEAAGTPPAKDA PKVSIKRLAYMNKPEIPVLFFGSIAAIANGVIFPIFGILISQAIKSFYEPPSELRKDTKFWALMFMILGIVSLIVYPSQTYLFGVAGSRLIQRIRSICFE KVVRMEVSWFDEPENSSGAVGARLSADAATVRALVGDKLGQTVQNIASIVAGLVIAFTASWQLALIILALVPLIGLNGYVQLKFMKGFSADAKMMYEEAS QVANDAVGSIRTVASFCSEEKVMELYRKKCDGPRKTGIREGLISGIGFGVSFFLLFSFYATSFYAGAQLVKRGKATFSDVFQVFFALTMASIAVSQSSSF GPDSSKAKSAVASIFSIIDRKSKIDPSNETGTTLATVKGDIELRHVSFCYPSRPDVQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGRI TLDGVEIQTLKIKWLRQQMGLVSQEPALFNETIRANIAYGKEGDASESEILAASGLANAHKFISGLQQGYDTMVGERGIQLSGGQKQRVAIARAIIKEPK ILLLDEATSALDAESEKVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHESLINIKDGFYASLVQLHTSASTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	0	1
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	3.5	0.9724
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10024486 [exp]	5.7	0.9562
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	6.3	0.9639
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	7.7	0.9657
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10013417 [exp]	8.5	0.9534
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	8.5	0.9708
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	10.2	0.9544
AT4G17486			PPPDE putative thiol peptidase...		Lus10007844 [exp]	12.0	0.9253
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	12.0	0.9574
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	16.8	0.9608

Compare expression of checked genes

Lus10038049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.