Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 1558 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1551 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1546 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G18050 1400 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 1363 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT2G36910 933 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28345 903 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G02530 769 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 760 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G01820 749 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009989 [exp] 2105 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 1827 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 1702 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010068 [exp] 1548 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10004520 [exp] 954 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009988 [exp] 832 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 831 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10035834 [exp] 805 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10010074 [exp] 781 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113000 [exp] 1653 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1653 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 1653 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1648 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1622 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1597 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.010G003000 [exp] 1526 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.017G085000 [exp] 911 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 847 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 834 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10038050 pacid=23163653 polypeptide=Lus10038050 locus=Lus10038050.g ID=Lus10038050.BGIv1.0 annot-version=v1.0 ATGCCTTTGATGACTATCATAATGGGCCAAACTATCAACTCCTTTGGGATGAACCAGACTGATGTCGTCAATGCCATTTCCAAGGTTTCTGTAAAATATG TCTACTTGGCCATGGGAGCTGCTGTGGCATCATTTCTTGAGGTGACTTGTTGGATGGTAACTGGAGAAAGGCAGGCAGCAAGAATACGGAGTCTGTACTT GGAGACAATTTTGAGACAAGATGTTGCATTCTTCGACAGCGAAACGAGCACAGGAGAGGTTATAGGGAGGATGTCTGGCGACACAGTTCTAATCCAGGAG GCCATGGGCGAGAAGGTAGGAAAGTTTCTGCAACTGATGGCGACATTTATCGGTGGGTTTGCTATAGCATTCATCAAAGGATGGAACCTTGCGTTGGTAA TGTTGTCGGCAATCCCACTTCTGGTGATTGCCGGAGGAGCGATGGCGACAATCATGGCAAAGATGAGTGCGAGAGGACAGCAAGCTTACGCCAATGCCGG CACTCTTGTTGAGCAAACTATTGGCTCCATCCGAACCGTTGCATCATTTACAAGGGAGAAGCAAGCCGTACGTACATATAACAAGTTTCTAGAGTTGGCA TATAAATCAGGTGTAAAAGAAGGTGCAACTGCTGGAATTGGAATTGGCATGGTTCTTGCGATTGTGTTTTACAGCTACGCCTTAGCCGTTTGGTATGGTG GAAAGTTAATATTGGATAAAGGATATTCCGGCGGACAAATTATAAATGTGATCATTGCTGTTTTAACGGCTTCCATGTCACTGGGCCAAGCAGCACCGCC GATGAGCGCGTTCGCCGCCGGCAAAGCAGCGGCGTACAAAATGTTCGAAACCATCGACAGGCGTCCAACAATCGACGCTTCCGATCCGAAAGGCAAAACG CTCCAGGAAATCAAAGGAGACATCGAATTCAAACAAGTCAGCTTCTCCTACCCAGCTAGACCAGACGAACTGATCTTCACCTCGTTTTCACTCACAATCC CTAGCGGCACCACCGCCGCGCTCGTCGGCCAAAGCGGCAGCGGGAAATCGACGGTGATCAGCTTGATCGAGAGGTTCTACGATCCACAGTCCGGCGAAGT GCTGATCGACGGTATCAATCTGAAGGAATTTCAGCTGAAGTGGATCCGGCAGCAGATCGGATTGGTCAGTCAGGAGCCAGTACTGTTTGCGTCGAGCATT AGGGATAATATCGCTTATGGCAAAGACGGCGCCAGTGATGAAGATATCAAAGCTGCTACTGAGCTCGCTAATGCTGCTAAGTTCATCGACAAGCTTCCTC AGGGAATTGACACCATGGTTGGTGAGCATGGAACTCAGCTCTCGGGCGGCCAGAAGCAGAGAATCGCCATAGCCAGAGCAATTTTGAAGAACCCTAGAAT TCTGCTACTGGATGAAGCCACAAGTGCACTGGACGCAGAATCAGAGAGGATAGTGCAAGATGCATTGGATAAGATCATGGTGGAACGAACCACTATCATC GTTGCTCATCGATTGACCACCGTCAGAGATGCTGATGTAATCGCCGTCATTCATCGAGGAAAGATCGTCGAAAAAGGTTCTCATACTAAGCTGCTAGAGG ATCCTCAAGGAGCATACTCCCAACTAATCCGTTTACAACAAGTAAACAGAGAAACAGAAGGAGGAGAAGAAGGAGAAGAAGAATCGCCACAGGAAATCAC TTCAGAATCATTTAGATCACACTCGTCGGCTCTAAGAGCCTCACTACGCAGATCTATAAGCAAAGGATCATCCAGACACAGCAGTCACAGATCATCATTC ACTCTCCCGATCGGGGTTCCCACGGTGGTAGATCATCAGAACAGCAACTCGGCCCACGAATTCGACGGATTCAAAACCACAAGAGAGAACATGCCCGATG TCCCTTTAACCCGACTGGCGTACCTAAACAAGCCGGAGTTACCGGCTATCGTAGCTGGCACGATCGCTGCCTGCATCAACGGATCGATCATGCCAATCTA CGGTGTCTTGATAAGCAAAGCCATCAAGACGTTCTTCGAGACACCACACCAAATGAAGATCCACACGAGGTTTTGGGCGCTCATGTTCATGACGCTCGGG TTTGCGACTTTAATAGTGCACCCTTTGAGGTCGTACTTCTTTGCGGTGGCGGGGTCTAGGCTGATCCAGAGGATCCGGTCGATGTGTTTTGAGAAAGTGG TTCATACTGAGATCGGTTGGTTCGACGAGGCTGAGCATTCGAGCGGTGCGATAGGTGCTAGGCTTTCGGCTGATGCTGCGATCGTGAGGTCACTAGTCGG GGATGCGTTGGCTGTGAATGTTCAGAATGTTGCTACTGCTGCTGCTGCTTTGATCATTGCTTTCACCGCCAGCTGGCAGCTTGCGTTTGTTATCTTGGCT TTGCTTCCTCTCACCCTTATCAATGGGTTTGCGCAAGTCAAGTTCATGAAGGGTTTCAGTGCTGATGCGAAGGCAATGTACGAGGAAGCGAGCCAAGTGG CGAATGATGCGGTGGGGAGCATAAGAACGGTGGCTTCCTTCTGTGCGGAAGAGAAAGTGATGGAACTGTACAGAAAGAAGTGTGAAGGGCCAGTGAAAAG TGGGGTAAAGCAAGGACTCATAAGTGGGATTGGGCTAGGGTTGTCTTCCTTGTTCCTCTACTCTTTCTATGCAATCAGTTTCTACATTGGAGCTAAACTA GTTGACAAGGGTGATGCAACTTTTACAGATGTTTTCCAAGTATTCTTTGCTCTGACCATGGCATCAATGGGAGTCGCTCACTCAAGCGGAGCAACCGACA CCTCGAAGGCAAAAGCAGCAGCTGCTTCCGTGTTCTCAATCATAGACAGGAAGTCTCAGATCGATTCAAGCGATGAATCCGGAACGATCCTTTCAAATGT AAAAGGAGAGATTGAACTTGTTCATCTCAGCTTCAAGTACCCTTCCAGGCCTGATGTTCAGATCTTCAGAGACATCAACTTGGTCATCCATTCAGGAAAA ACCGTCGCACTAGTGGGAGAAAGCGGGAGCGGAAAATCAACGGTGATAGCTCTGCTACAAAGATTCTACGATCCAAATTCAGGACACATCACATTAGACG GAATCGAAATAAAAAAGCTCCAACTCAAATGGCTAAGGAAGCAAATGGGCCTAGTGGGCCAAGAGCCGTCGCTGTTCAACGACACGATCCGAGCCAACAT CGCCTACGGGAAAGAAGGGGATGCAACAGAGGCAGAGATCGTTTCGGCATCGGAGCTAGCCAATGCTCACAGATTCATCAGCGGGCTAGGGGAAGGGTAC CATACGATGGTCGGGGAACGTGGGGTCCAGTTGTCGGGCGGGCAGAAGCAGAGGGTGGCCATAGCTCGAGCCATAGTGAAAAGTCCGAAGATCTTGTTGC TAGACGAGGCGACGAGTGCGTTGGATGCCGAGTCAGAGAAAGTGGTGCAGGACGCGTTGGAGAGAGTGATGAAGAGCAGGACGACGGTGGTGGTGGCCCA CAGGCTGTCGACGATTAAGAATGCGGATCTGATAGCGGTGGTGAAGAATGGAGTGATTGTGGAGAAGGGTAGCCATGAGAGCTTGATGGGTATTAAGGAT GGTTCCTATGCTTCATTGGTGGCTCTTCATTCTAGTGCCAAAACTGCTTAG
AA sequence Show only first row Show all	>Lus10038050 pacid=23163653 polypeptide=Lus10038050 locus=Lus10038050.g ID=Lus10038050.BGIv1.0 annot-version=v1.0 MPLMTIIMGQTINSFGMNQTDVVNAISKVSVKYVYLAMGAAVASFLEVTCWMVTGERQAARIRSLYLETILRQDVAFFDSETSTGEVIGRMSGDTVLIQE AMGEKVGKFLQLMATFIGGFAIAFIKGWNLALVMLSAIPLLVIAGGAMATIMAKMSARGQQAYANAGTLVEQTIGSIRTVASFTREKQAVRTYNKFLELA YKSGVKEGATAGIGIGMVLAIVFYSYALAVWYGGKLILDKGYSGGQIINVIIAVLTASMSLGQAAPPMSAFAAGKAAAYKMFETIDRRPTIDASDPKGKT LQEIKGDIEFKQVSFSYPARPDELIFTSFSLTIPSGTTAALVGQSGSGKSTVISLIERFYDPQSGEVLIDGINLKEFQLKWIRQQIGLVSQEPVLFASSI RDNIAYGKDGASDEDIKAATELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALDKIMVERTTII VAHRLTTVRDADVIAVIHRGKIVEKGSHTKLLEDPQGAYSQLIRLQQVNRETEGGEEGEEESPQEITSESFRSHSSALRASLRRSISKGSSRHSSHRSSF TLPIGVPTVVDHQNSNSAHEFDGFKTTRENMPDVPLTRLAYLNKPELPAIVAGTIAACINGSIMPIYGVLISKAIKTFFETPHQMKIHTRFWALMFMTLG FATLIVHPLRSYFFAVAGSRLIQRIRSMCFEKVVHTEIGWFDEAEHSSGAIGARLSADAAIVRSLVGDALAVNVQNVATAAAALIIAFTASWQLAFVILA LLPLTLINGFAQVKFMKGFSADAKAMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPVKSGVKQGLISGIGLGLSSLFLYSFYAISFYIGAKL VDKGDATFTDVFQVFFALTMASMGVAHSSGATDTSKAKAAAASVFSIIDRKSQIDSSDESGTILSNVKGEIELVHLSFKYPSRPDVQIFRDINLVIHSGK TVALVGESGSGKSTVIALLQRFYDPNSGHITLDGIEIKKLQLKWLRKQMGLVGQEPSLFNDTIRANIAYGKEGDATEAEIVSASELANAHRFISGLGEGY HTMVGERGVQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALERVMKSRTTVVVAHRLSTIKNADLIAVVKNGVIVEKGSHESLMGIKD GSYASLVALHSSAKTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10038050 [exp]	0	1
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	2.2	0.9675
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	3.5	0.9594
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	9.0	0.9558
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	10.6	0.9535
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	11.0	0.9480
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	12.0	0.9443
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025596 [exp]	13.6	0.9195
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	13.6	0.9513
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	16.7	0.9475
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	18.3	0.9466

Compare expression of checked genes

Lus10038050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.