Plant FIBer expression Database

Lus10038052 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01870 808 / 0 tolB protein-related (.1)
AT1G21680 431 / 2e-142 DPP6 N-terminal domain-like protein (.1)
AT1G21670 393 / 1e-127 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028545
[exp]
426 / 2e-140 AT1G21680 897 / 0.0 DPP6 N-terminal domain-like protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G079900
[exp]
459 / 5e-153 AT1G21680 936 / 0.0 DPP6 N-terminal domain-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07676 PD40 WD40-like Beta Propeller Repeat
Representative CDS sequence
>Lus10038052 pacid=23163805 polypeptide=Lus10038052 locus=Lus10038052.g ID=Lus10038052.BGIv1.0 annot-version=v1.0
ATGCAAGATCCCAAAGGTACAGTCTTGTTCACGACCATCGGCAGGACGGATTACGGCTTCGACGTCTTCTCCGTCAACCTCTCCTCCCCCGGCGATGAGC
GACTCCTCACAGACGGCATTTCCATCAACTTCAACGCCCAGTTCCTTGACGGCGCCAAATCTGGTCAACGTCTGCATCAGCCTGACGTAGTCTTCGTCTC
TGAACGAATCGGGTTGCCCAGAATTTTCAAGACCAACCGAAATGCAGAACCGAGTCAGCTGCCGTGGTCAGCAGCTCTCGAAGGGAGCCTCTTCGTCGAC
CGGCCCATCGTTAAGAACGGCCACCTTTACTTTGCCTCTGCTCACGAGAATCCCAACTCGCCGTTCCGGAGCTGGTCCGCTATCTACTTGATTGACGATT
ATGGCGGTGGAGTTCGTCGATTGACGCCTCCTGGAGAAGTCGATTACAGTCCGGCAGTTTCTCGCTCTGGCAAATTCCTCGCCGTTGCTTCGTACGGTTC
CCGCCCTTGGGGCGGCGAATTCCAGGAACTGCACACTGGTATAGTTATTTTTCCGATATCAAATCCTGATCAGCGTGTCGTCGTCTGTGAGCGCGGTGGG
TGGCCGTCGTGGTCGGGAGATTCGACGGTTTTCTTCCACCGGAAAGCGGAGGACGGATGGTGGAGCATATTCCGGATGGAGATTCCGTCGGAGAAGTTCT
TCGATTTGGTATCCTTTAAATCTCAGATACCCATTCGCGTCACTCCGGCTGGGGTTCACTGCTTCACTCCGGCGGCATTCCACGACGGGAAGAGAATTGT
CGTTGCGACTCGGAGGAAACACAATAGTCATCGCCAGATCGAGATCTTCGATCTCAAATCGGGCGAGTTTTCTCCAGTGACGGAGCTCTTAAATGCCAAT
ATTCATCACTACAATCCTTTTGTCTCTTCTGATTCCAATTTCATCGGTTACCATCGCTTCAGAGGCGAGTCGGGGCCGGGTCCGACGAAGATTCCTCGAT
TGGAACCGGTCGTTTCGCCGGTCAAAGATCTTCGAATGGTGAGAATCGCCGGAGCTTTCCCAGCTTTTTCTCCCGCCGGTGACCTTATTGCATTTAATCC
CGGGTTAGGCCCGAACGGTGGGTTAAAGGTCGTGAAATCAGACGGCTCGAAGGAATGGACGTTAATTAACGGTCGTACGTCCTTCTGTAACGCGTGGAGT
CCCACCGAGAAGCACGTGATCTACACGTCCATCGGTCCGATCTTCGCTTCGACCGATAGAACCGTCCAGATTGCTAGAGTCACTTTTAACCCTCTCGATC
TTGGAATCGACGATCAAGAAATGCCGTGTGATGTTAAGATCTTAACGAGGCACGACTCGGGTAACAATGCCTTCCCGGCATGTTCGCCAGATGGCAAATT
TATAGTCTTCCGATCCGGAAGGTCTGGATACAAGAACTTGTATGTGATGGATGCCGTTAATGGAGAAGTTAATGCCAACAACGGTGCACGTCAATTGACC
AAAGGGTCGTGCATTGATACAATGCCCTCGTGGTCACCTAACGGTGACCTAATTGCCTTCTCTTCAAACAGACACAACCCAAGTAAAACAGATACATTTA
GTATCTACGTAGTGAGACCTGACGGGTCGGATCTCAAGAGGATCCAGGTTGTTGCGGGCACGAAGGAGGAAGCTGACAAGGAGAGGATTAACCATGTGTG
CTTCAGTAAAGATGGGGAGTGGCTGCTGTTTACAGCCAACTTGGGAGGTGTGACAGTCGAGCCAGTGTCGTTGCCCAATCAGTTTCAGCCATACGGTGAC
TTATACGTAATGAGGTTGGATGGGAGTGGGTTGAGGAGGCTGACGTGGAATGGATACGAAAACGGGACCCCGGCGTGGCGCCCGGAATCTGGTGATGTGG
ATGAACTGGCAAATTTGCGTTTGGATGAACAAGTGGCCGTTGGTGATAAGTTGACCGGAGAGTTTGACGAACCCTTATGGATATCGTGTGACGTCTAA
AA sequence
>Lus10038052 pacid=23163805 polypeptide=Lus10038052 locus=Lus10038052.g ID=Lus10038052.BGIv1.0 annot-version=v1.0
MQDPKGTVLFTTIGRTDYGFDVFSVNLSSPGDERLLTDGISINFNAQFLDGAKSGQRLHQPDVVFVSERIGLPRIFKTNRNAEPSQLPWSAALEGSLFVD
RPIVKNGHLYFASAHENPNSPFRSWSAIYLIDDYGGGVRRLTPPGEVDYSPAVSRSGKFLAVASYGSRPWGGEFQELHTGIVIFPISNPDQRVVVCERGG
WPSWSGDSTVFFHRKAEDGWWSIFRMEIPSEKFFDLVSFKSQIPIRVTPAGVHCFTPAAFHDGKRIVVATRRKHNSHRQIEIFDLKSGEFSPVTELLNAN
IHHYNPFVSSDSNFIGYHRFRGESGPGPTKIPRLEPVVSPVKDLRMVRIAGAFPAFSPAGDLIAFNPGLGPNGGLKVVKSDGSKEWTLINGRTSFCNAWS
PTEKHVIYTSIGPIFASTDRTVQIARVTFNPLDLGIDDQEMPCDVKILTRHDSGNNAFPACSPDGKFIVFRSGRSGYKNLYVMDAVNGEVNANNGARQLT
KGSCIDTMPSWSPNGDLIAFSSNRHNPSKTDTFSIYVVRPDGSDLKRIQVVAGTKEEADKERINHVCFSKDGEWLLFTANLGGVTVEPVSLPNQFQPYGD
LYVMRLDGSGLRRLTWNGYENGTPAWRPESGDVDELANLRLDEQVAVGDKLTGEFDEPLWISCDV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G01870 tolB protein-related (.1) Lus10038052
[exp]
0 1
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10033743
[exp]
2.0 0.9721
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Lus10026178
[exp]
2.0 0.9705
AT2G30140 UDP-Glycosyltransferase superf... Lus10042261
[exp]
2.2 0.9728
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10019991
[exp]
2.4 0.9721
AT5G23160 unknown protein Lus10017395
[exp]
3.9 0.9698
AT3G29635 HXXXD-type acyl-transferase fa... Lus10005362
[exp]
5.5 0.9678
AT4G27290 S-locus lectin protein kinase ... Lus10038552
[exp]
8.4 0.9627
AT3G09270 ATGSTU8 glutathione S-transferase TAU ... Lus10021102
[exp]
8.5 0.9620
AT3G47550 RING/FYVE/PHD zinc finger supe... Lus10019102
[exp]
9.2 0.9555
Lus10026081
[exp]
9.4 0.9581

Lus10038052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.