Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01880 535 / 0 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189800 [exp] 604 / 0 AT4G01880 574 / 0.0 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05206 [flax] [poplar] TRM13 Methyltransferase TRM13 CL0361 [flax] [poplar] C2H2-zf PF05253 [flax] [poplar] zf-U11-48K U11-48K-like CHHC zinc finger CL0361 [flax] [poplar] PF11722 [flax] [poplar] zf-TRM13_CCCH CCCH zinc finger in TRM13 protein
Representative CDS sequence Show only first row Show all	>Lus10038053 pacid=23163895 polypeptide=Lus10038053 locus=Lus10038053.g ID=Lus10038053.BGIv1.0 annot-version=v1.0 ATGGAGCAGCCTCGTTGCAAGCTCTGGCTGCCCAAAAAGAATCGATTCTGTGCAAATCTCCCTCTTAACGAATCTCCGTTCTGCGGAAATCACACGCTGA GATCTGACAGCAAATGGATTCCCTGCCCAATCGACTCCTCACATTCTGTGCTTACAGAAAACCTTGAAAGTCATGTCAAGAGATGTCCATTCATGAAACA AGCACAATCCTTGTCCGTCCAGCCATTTTATTGCAAGGGAATAAATTCTGGAAAGGGGGGAGATATTGACGTTACCTCCGAAATGAAGAGGCATGCTGTT TACAGATTGAGTGTAGATGAATTCTATAAATTAATCGAAAAGGTACAACGCGTTCATGCTTCAGTCTGTAATGACATAGGGGAGTCGTATAAGGCGCCTG AAGCCTGTAACATGTGGATTAACAGAGAGATAGACAGGAAATTGCCGTTTCAAGAGAGACATGTCATACAGCAAGCATCAATCCTAGGAAACTTGGAAGA CTTTGGAGTACTCAAGAGATCTTATGGAAAAGATCACGATGATAGAAAATCTGCTCCTCCTGCAGTTGTTGAATTTGGAGCAGGAAGAGGGTACTTAACA CAGACACTGGCTGACTGTTACGGGATCAGAAAAGTTTTCCTTGTTGAGCGAAAGTCATATAAGCTTAAGGCGGATCGATCTTTGCGGCAAAAAGAGAGCT TGTCATTAGAGCGATTAAGAATCGATATTGAGGACTTGGACTTGAAAGCTGTTGAGTCTTTGCATGGAGTCCATTATCTTGCTATCGGGAAGCACCTCTG CGGACCAGCAACTGATTTGACACTAAGGTGTTGCGTGCCTGAACGAGTTTGCACGGACGCTGCTGCAGAAGGAGGTGGTGATGAAACTCCGTACCTTGAG GGCTTTGCTATAGCAACTTGTTGTCATCATCTCTGCCAATGGAAGCATTACATAAATAAAGAATTCATGCTCAGTTTAGGGATCTCTAAAGAAGAGTTCC ACGCTATCACCTGGTTCACCAGTTGGGCTGTTGATGGTGATCATGGAGCAGAAGTTTCGGACAGCGGATTGCATCTACAACTCATGTACTATTTCGATTT CTTGACTTACTCGAAGGAGAAAGAGAAATTGCTTGGGACGGAAGCAACAGGGGTGGAAGGTGTAGTGAGGAACATGAAAGCAGTGGAAAGAGCAGCGCTA GGGTTCATGTGTAAGCAGATCATTGACAAAGGAAGGATGGCTTGTGGGATCCGAAATGGTGTCGAAACTCGCCTAGTTAAATATGTGCCTCCCGCCATCT CTCCTGAAAACCATTTATTGATTGCCAGACGCATCCGAGAGCCCTAA
AA sequence Show only first row Show all	>Lus10038053 pacid=23163895 polypeptide=Lus10038053 locus=Lus10038053.g ID=Lus10038053.BGIv1.0 annot-version=v1.0 MEQPRCKLWLPKKNRFCANLPLNESPFCGNHTLRSDSKWIPCPIDSSHSVLTENLESHVKRCPFMKQAQSLSVQPFYCKGINSGKGGDIDVTSEMKRHAV YRLSVDEFYKLIEKVQRVHASVCNDIGESYKAPEACNMWINREIDRKLPFQERHVIQQASILGNLEDFGVLKRSYGKDHDDRKSAPPAVVEFGAGRGYLT QTLADCYGIRKVFLVERKSYKLKADRSLRQKESLSLERLRIDIEDLDLKAVESLHGVHYLAIGKHLCGPATDLTLRCCVPERVCTDAAAEGGGDETPYLE GFAIATCCHHLCQWKHYINKEFMLSLGISKEEFHAITWFTSWAVDGDHGAEVSDSGLHLQLMYYFDFLTYSKEKEKLLGTEATGVEGVVRNMKAVERAAL GFMCKQIIDKGRMACGIRNGVETRLVKYVPPAISPENHLLIARRIREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01880			methyltransferases (.1)		Lus10038053 [exp]	0	1
					Lus10024697 [exp]	21.7	0.6899
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	25.4	0.6128
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	34.6	0.6449
AT1G22460			O-fucosyltransferase family pr...		Lus10020943 [exp]	46.0	0.5985
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	56.4	0.6084
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	68.8	0.5698
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	98.2	0.5834
AT5G39960			GTP binding;GTP binding (.1)		Lus10014634 [exp]	99.0	0.5947
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10015454 [exp]	100.4	0.5851
AT5G66440			unknown protein		Lus10040435 [exp]	100.5	0.5749

Compare expression of checked genes

Lus10038053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.