Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51890 247 / 3e-80 Peroxidase superfamily protein (.1) AT4G33420 246 / 8e-80 Peroxidase superfamily protein (.1) AT3G01190 240 / 1e-77 Peroxidase superfamily protein (.1) AT4G11290 238 / 2e-76 Peroxidase superfamily protein (.1) AT3G03670 232 / 2e-74 Peroxidase superfamily protein (.1) AT5G42180 232 / 3e-74 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G17820 231 / 5e-74 Peroxidase superfamily protein (.1) AT1G71695 231 / 1e-73 Peroxidase superfamily protein (.1) AT2G18980 228 / 2e-72 Peroxidase superfamily protein (.1) AT1G05260 227 / 3e-72 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028736 [exp] 374 / 5e-130 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028688 [exp] 368 / 3e-127 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1) Lus10032926 [exp] 286 / 2e-95 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10038055 [exp] 268 / 7e-88 AT2G41480 243 / 2e-78 Peroxidase superfamily protein (.1) Lus10009990 [exp] 261 / 1e-85 AT2G41480 233 / 2e-74 Peroxidase superfamily protein (.1) Lus10007638 [exp] 251 / 8e-82 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10018374 [exp] 251 / 1e-81 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007051 [exp] 243 / 1e-78 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10031664 [exp] 243 / 1e-78 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003600 [exp] 305 / 6e-103 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 290 / 1e-96 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 284 / 1e-94 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 246 / 1e-79 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.005G195600 [exp] 244 / 1e-78 AT1G71695 460 / 4e-163 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 243 / 2e-78 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 242 / 3e-78 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 240 / 1e-77 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 239 / 5e-77 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 239 / 7e-77 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10038054 pacid=23163650 polypeptide=Lus10038054 locus=Lus10038054.g ID=Lus10038054.BGIv1.0 annot-version=v1.0 ATGGCGAGTTCGAGTCATCAATCTTTGGTTTCCCAGGTGCTGCTGCTACTAGTATTAATGATGATTGCTGCAGCGGCGGACGGTCATGGTCTTAGAGTTG GATACTACAAGAAGACTTGTCCGTCGGTCGAATCTATCGTGAGGAAAGCGGTCAACAAGGCTCTGTCTCGTGATCCCAAACTCGGAGGTGGGCTCATCCG GATGCATTTCCACGACTGCTTTGTTCGGGGATGTGATGGCTCCGTGCTACTGGATCCCGTCCGTGGGGCGCCACCAGAGAAGAACCACCCGGCTAACGGT GTGACCCTACGCGGTTTCGAGGTAATCAACGAAGCCAAATCGCAAATTGAGTCGGTCTGTCCAAACACCGTCTCTTGCGCCGACATCGTCACCTTTGCCG CTAGAGACAGCTCCTACAACCTCGGACACATATACTACGCAGTCCCCTCAGGGCGTCGCGACGGCCGCATCTCAAAATTTGACGAAGTCGCCGAAAACCT CCCTCCTCCGTCCTTCAACGCCGAGCAGCTCATCGCGAATTTCGCCCGAAAGGGGATGTCCCTCGACGAGATGGTCACACTCTCCGGTGCGCATTCCATC GGGGAGGCTCACTGCTCTTCGTTCTCCGAGCGTCTCTATTCTTTTAACCAAACGCATTCCCAAGACCCTTCCCTCAATAGGGCCTTTGCGGCCAGGTTGA GGGCCAGGTGTCCCCGACCATCGTCAAACAACGGCGGCGGCGGAAACAGCAGCGACCCGACCGTGGGACTGGACCCCACACCGGATCATCTGGACAACAA GTATTACGTGGAGTTGCAACGTGGTCGAGCACTGCTGGCGTCGGACCAAACACTGATGGATAGCAGGTTGACTAGGTGGAATGTGGTCAACAATGCCAGA AATGGTGCCACGTGGGCTGCCAAGTTTGCAAAGGCAATGCAACATATGGGTTCTCTTGACGTTCTCACGGGGAAGCAAGGTGAGATCAGGAGGGTGTGTA CCTCTGTGAACTGA
AA sequence Show only first row Show all	>Lus10038054 pacid=23163650 polypeptide=Lus10038054 locus=Lus10038054.g ID=Lus10038054.BGIv1.0 annot-version=v1.0 MASSSHQSLVSQVLLLLVLMMIAAAADGHGLRVGYYKKTCPSVESIVRKAVNKALSRDPKLGGGLIRMHFHDCFVRGCDGSVLLDPVRGAPPEKNHPANG VTLRGFEVINEAKSQIESVCPNTVSCADIVTFAARDSSYNLGHIYYAVPSGRRDGRISKFDEVAENLPPPSFNAEQLIANFARKGMSLDEMVTLSGAHSI GEAHCSSFSERLYSFNQTHSQDPSLNRAFAARLRARCPRPSSNNGGGGNSSDPTVGLDPTPDHLDNKYYVELQRGRALLASDQTLMDSRLTRWNVVNNAR NGATWAAKFAKAMQHMGSLDVLTGKQGEIRRVCTSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013922 [exp]	3.0	0.9535
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	3.3	0.9588
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	5.7	0.9449
					Lus10011681 [exp]	6.3	0.9518
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023514 [exp]	6.7	0.9397
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	8.7	0.9162
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030439 [exp]	9.7	0.9538
					Lus10021010 [exp]	17.0	0.9436
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017014 [exp]	19.6	0.9060
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Lus10027110 [exp]	20.7	0.9399

Compare expression of checked genes

Lus10038054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.