Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10660 252 / 2e-82 unknown protein AT5G62960 227 / 2e-72 unknown protein AT2G47115 210 / 2e-66 unknown protein AT3G27770 182 / 2e-55 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009991 [exp] 575 / 0 AT1G10660 246 / 3e-80 unknown protein Lus10029133 [exp] 236 / 4e-75 AT1G10660 338 / 5e-115 unknown protein Lus10014556 [exp] 226 / 7e-72 AT5G62960 305 / 3e-102 unknown protein Lus10032130 [exp] 225 / 1e-71 AT5G62960 303 / 2e-101 unknown protein Lus10027692 [exp] 215 / 5e-68 AT5G62960 355 / 2e-122 unknown protein Lus10042109 [exp] 208 / 4e-65 AT5G62960 397 / 1e-138 unknown protein Lus10039964 [exp] 164 / 1e-46 AT5G62960 247 / 7e-78 unknown protein Lus10013029 [exp] 165 / 8e-46 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10002386 [exp] 151 / 2e-43 AT5G62960 320 / 5e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G190200 [exp] 299 / 1e-100 AT2G47115 344 / 1e-118 unknown protein Potri.014G115200 [exp] 282 / 7e-94 AT2G47115 340 / 4e-117 unknown protein Potri.010G042600 [exp] 249 / 3e-81 AT1G10660 372 / 1e-129 unknown protein Potri.001G347400 [exp] 237 / 2e-76 AT3G27770 314 / 9e-107 unknown protein Potri.015G078200 [exp] 224 / 3e-71 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 216 / 4e-68 AT5G62960 387 / 1e-134 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038056 pacid=23163670 polypeptide=Lus10038056 locus=Lus10038056.g ID=Lus10038056.BGIv1.0 annot-version=v1.0 ATGTCGGATTCCGACAGGAGGGGAATCGGGTATTGGCTGCAATGGCAAGTTGCCGTTTGCGGGTTCATTATCTTCGCCCCTGGAGTTACGGCGGCCGTTT ATCTCATCAAGAAGAATCTCCCACGGGAATCAGAAGAAGAGACGATTTATCTTAACCATCTATGGAAGCCTTGCTGGAGATTCCTTAACCCTCTATGGCT TCTTGCTTACAGAGTGTTCTCTCTCTTCTGCTTGGCTCCCGTGCTCTATGGCGCCGTCGCCGCCGATGGATTCTACGCCTTCTTCTTCTACACTCAGTGG ACATTTACCCTTGTGATGGTGTACTTTGCGTTGGCTACTGCCATTTCTGCATATGGATGTTACTGGGAATCAAGAAAGCAACCATCAGCTGTAGCTAAAC ATGGTGAAGAAGCCTCTTTGTTCATTGAAAGGGGTGTGGAGGATCATCACGATAAAGTGTCTGAAACAGTTCAACTACTGAAACCTGGGTTCTGGGGTTA TTCATTGCTGATTATATACCAGACATGTGGAGGAGCAGTGATCTTGACTGACATTGTGTTCTGGGGTCTTCTCCTCCCTTTCCAATCCGGTGAACATTTC AAATTGGATGTGCTGATGGGCTGCATCCACTCCATGAATGCTGGTTTCCTAATCCTTGATACTGCTCTCAACAGCCTTCCGTTTCCTTGGTTCCGGTTCG CATACTTCGTGCTGTGGAGTTCTCTCTACATTGTTTTCCAATGGGTTATCCACGCCTGTGGGATTTCATGGTGGCCGTACGCTTTCTTGGAGCTGAACAC TCCTTGGGCTCCTTTATGGTACTTTGGCATGGCTTTGGTGCATGTTCCCTGTTACGCAATGTACGTGCTGGTTGTCAAAGCCAAAGACTCAGTCCTCCAC AAATGGTTACCTTCTCATTCTCCTCGGTCAGATTAG
AA sequence Show only first row Show all	>Lus10038056 pacid=23163670 polypeptide=Lus10038056 locus=Lus10038056.g ID=Lus10038056.BGIv1.0 annot-version=v1.0 MSDSDRRGIGYWLQWQVAVCGFIIFAPGVTAAVYLIKKNLPRESEEETIYLNHLWKPCWRFLNPLWLLAYRVFSLFCLAPVLYGAVAADGFYAFFFYTQW TFTLVMVYFALATAISAYGCYWESRKQPSAVAKHGEEASLFIERGVEDHHDKVSETVQLLKPGFWGYSLLIIYQTCGGAVILTDIVFWGLLLPFQSGEHF KLDVLMGCIHSMNAGFLILDTALNSLPFPWFRFAYFVLWSSLYIVFQWVIHACGISWWPYAFLELNTPWAPLWYFGMALVHVPCYAMYVLVVKAKDSVLH KWLPSHSPRSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10660			unknown protein		Lus10038056 [exp]	0	1
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	4.1	0.9348
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	12.8	0.8914
AT1G51550			Kelch repeat-containing F-box ...		Lus10033377 [exp]	16.2	0.8976
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10018294 [exp]	20.5	0.9051
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	23.9	0.9025
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	25.2	0.8988
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	27.3	0.8856
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10018196 [exp]	27.3	0.8651
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	27.7	0.8885
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	28.4	0.9019

Compare expression of checked genes

Lus10038056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.