Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62260 377 / 1e-129 Protein phosphatase 2C family protein (.1.2) AT1G48040 311 / 1e-103 Protein phosphatase 2C family protein (.1) AT3G17250 290 / 7e-95 Protein phosphatase 2C family protein (.1) AT2G33700 278 / 7e-91 Protein phosphatase 2C family protein (.1) AT3G51470 263 / 2e-85 Protein phosphatase 2C family protein (.1) AT2G25620 233 / 5e-73 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT4G31750 133 / 9e-36 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 129 / 2e-33 Protein phosphatase 2C family protein (.1) AT5G10740 125 / 2e-32 Protein phosphatase 2C family protein (.1) AT1G43900 114 / 2e-28 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009993 [exp] 598 / 0 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10037832 [exp] 333 / 3e-112 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10017106 [exp] 332 / 9e-112 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 284 / 7e-93 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 284 / 1e-92 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 281 / 7e-92 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 280 / 2e-91 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001682 [exp] 242 / 1e-76 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 233 / 3e-73 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115500 [exp] 462 / 1e-162 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 412 / 3e-143 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2) Potri.010G151500 [exp] 328 / 3e-110 AT1G48040 418 / 8e-146 Protein phosphatase 2C family protein (.1) Potri.008G100700 [exp] 326 / 2e-109 AT1G48040 376 / 5e-129 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 282 / 3e-92 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.005G253700 [exp] 281 / 6e-92 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 278 / 7e-91 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 277 / 2e-90 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 240 / 4e-76 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 238 / 2e-75 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10038058 pacid=23163836 polypeptide=Lus10038058 locus=Lus10038058.g ID=Lus10038058.BGIv1.0 annot-version=v1.0 ATGGGAGCTGAAGCAGCAGCAGAGGTAGTAGTTTTTCAGCAGAGCGTCGGAGTTCCGGTGCTGGATGTTCAGCTGGTCGATGCCAGGTTGAGCCACCGAG TTGGAATCGAGGACTCGGCTGAATTGTGCGGCTCGCATGAGGATGTTGATGTTAAGCCGGTTCACAAAATCGCTGAGGAAGTTCTGGAGGCTGTCGGTTT ACAATTCGTTCCCAGCATTCGTTCCGGGAGTTTTGCTGATATTGGTCCTCGGAGATACATGGAAGACGAGCATATACGAATCGATGATCTATCAACACAT TTAGGCTCACTCTTCACATTTCCAAGGCCAAGTGCTTTCTATGGGGTTTTCGACGGCCATGGAGGACCGGATGCTGCAGCGTACATTCGGAAGAACGTGA TGAGGTTCTTCTTCGAAGATGTCAAGTTCCCTCAGACATCCGAAGTCGATCCAATTTTTTTGGAAGCAGTGGAGAATTCCCTTAGGGAAGCTTTCCTCCT TGCCGATCTAGCTTTGGCTGATGATGGTACTGTTAGCAGCTCTTCCGGGACGACAGCGATCGCTGCATTTGTATTCGAAAGGCTCCTACTAGTGGCGAAT GCCGGGGACTGCAGAGCGGTACTCTGCCGAAAAGGCGAAGCGATCGACATGTCACAAGACCATCGGCCAATCTACCCGTCCGAACGGAGCAGGGTCGAGC AGCTAGGGGGTTACATCGACGACGGATACCTAAACGGGGTGTTATCCGTTTCACGAGCACTCGGAGATTGGGACATGAAGAAGCTCCCCCGGAGCTCTTT GTCGTCGCCGCCTTCTCCTTCTCCTCTGATATCGGAGCCAGAGTTCCGTCGGCTGTCCCTCACGGAGGACGACGAGTTCCTTATCCTCGGGTGCGACGGG ATATGGGACGTGATGTCAAGCCAGCATGCCGTCGGGATCGTGAGGCGTGGATTGCGTCGGCACGATGACCCCGAGCAGTGTGCTAGGGACCTAGTGATGG AGGCGCTGCGGCGCAACACGTTCGACAACCTGACGGTGATTGTGGTGTGCTTTTCGGAGCCGTCGTCTCCGAGACCGGCCAGGCCGAGGAGGGGGAAGTG TTGTAGCTTGTCTGCGGATGCGTTGTGTAGCTTGAGGAACTTGCTGGATGGATAA
AA sequence Show only first row Show all	>Lus10038058 pacid=23163836 polypeptide=Lus10038058 locus=Lus10038058.g ID=Lus10038058.BGIv1.0 annot-version=v1.0 MGAEAAAEVVVFQQSVGVPVLDVQLVDARLSHRVGIEDSAELCGSHEDVDVKPVHKIAEEVLEAVGLQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSTH LGSLFTFPRPSAFYGVFDGHGGPDAAAYIRKNVMRFFFEDVKFPQTSEVDPIFLEAVENSLREAFLLADLALADDGTVSSSSGTTAIAAFVFERLLLVAN AGDCRAVLCRKGEAIDMSQDHRPIYPSERSRVEQLGGYIDDGYLNGVLSVSRALGDWDMKKLPRSSLSSPPSPSPLISEPEFRRLSLTEDDEFLILGCDG IWDVMSSQHAVGIVRRGLRRHDDPEQCARDLVMEALRRNTFDNLTVIVVCFSEPSSPRPARPRRGKCCSLSADALCSLRNLLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	0	1
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10007540 [exp]	2.2	0.9068
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	4.5	0.8966
AT5G01750			Protein of unknown function (D...		Lus10002477 [exp]	4.9	0.8772
AT1G76600			unknown protein		Lus10012442 [exp]	7.5	0.8681
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	10.4	0.8787
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	11.5	0.8699
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	14.4	0.8843
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	16.3	0.8556
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10029615 [exp]	18.2	0.8065
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039448 [exp]	19.5	0.8758

Compare expression of checked genes

Lus10038058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.