Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02460 600 / 0 Pectin lyase-like superfamily protein (.1) AT4G01890 543 / 0 Pectin lyase-like superfamily protein (.1) AT1G48100 533 / 0 Pectin lyase-like superfamily protein (.1) AT1G56710 515 / 0 Pectin lyase-like superfamily protein (.1) AT5G14650 360 / 1e-120 Pectin lyase-like superfamily protein (.1) AT1G10640 353 / 2e-116 Pectin lyase-like superfamily protein (.1) AT1G60590 351 / 1e-115 Pectin lyase-like superfamily protein (.1) AT1G80170 314 / 2e-102 Pectin lyase-like superfamily protein (.1) AT3G26610 310 / 1e-100 Pectin lyase-like superfamily protein (.1) AT1G70500 310 / 2e-100 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009994 [exp] 836 / 0 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 511 / 5e-179 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 508 / 1e-177 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 361 / 2e-119 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 356 / 1e-117 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 344 / 2e-113 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 344 / 8e-113 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 311 / 7e-101 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 310 / 2e-100 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115700 [exp] 676 / 0 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 660 / 0 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 580 / 0 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 568 / 0 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 538 / 0 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 535 / 0 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 367 / 2e-122 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 349 / 5e-115 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 344 / 4e-113 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 320 / 1e-104 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10038059 pacid=23163868 polypeptide=Lus10038059 locus=Lus10038059.g ID=Lus10038059.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTCCCAATTCTTCTCACCATCATCATCGCCACCACCATTACTTCCATGACTCAAGCTAGGTTTCACTACCATAACCATGATCATCACCACA CTAAACACAACCATCCTTCTCAAAATGGTGGCTTAATCTCATACATTTCATCACCTCCAACACTTCCGCCTGATGACCTTGAATCTCCATCTCCTAATTC ACCACAACCCTTTCCTCCCCCTAGACCGAAATCGGCCACCCTTATTTCACCTCCAACTCCTGCTCCAGCTCCAGCTCCTGCTAATGCTTACGATGATGGC CAAGGGGTGCTCGATGTAAGGAGATTTGGTGCCATTGGCGATGGTATAACTGATGACACAATTGCATTCAAGATGGCTTGGGATGCGGCATGCCAACTTG GTTCTTCTGTAATCCGTGTGCCAAAAGGATTAACATTCATGATTCAATCCACCATCTTCACTGGCCCTTGTCAAAGTGGTGTTATCTTTCAGGTCGACGG GACAATTACTCCGCCGGATGGACCGGATTCATGGCCGGAGAAGAACAGCAAGAAACAATGGCTAGTGTTCTACAAGGTGAACGAAATGTCACTTGTGGGT GGAGGTGGGTTTAATGGCAGAGGACAGAAATGGTGGGATCTTCCATGTAAACCTCACAAGGTTGTGATAAACGGGACGAAACCACGTGGACCATGCGACA GCCCAATTGCCATAAGATTCTTTATGAGCTCCAACTTAACAGTGGAAGGAATCAGACTCAAGGACAGTCCTCAGTTCAACTTCAGATTTGATAACTGCAA GAATGTTCACATTGAGTCCATCCATATCACAGCTCCTGCATTGAGTCCCAATACCGATGGAATCCACATTGAGAACACCAATGGTGTTGGGATATACAAT TCAATCGTCTCCAATGGAGACGATTGTGTGTCGATTGGATCAGGTTGTTACGATGTTGACATCAGAAATGTTACATGTGGACCTAGTCATGGAATTAGCA TTGGGAGCCTTGGGAATCATAATTCAAAGGCGTGTGTATCAAACATCACAGTTAGAGACTCGACGATCAGAGCATCTGATAACGGGGTGAGGATCAAGAC ATGGCAGGGCGGGTCAGGGGCAGTATCGGGGATAACATTTAGCAACATCCATATGGACAATGTTCGTAATCCGATCATTATTGACCAGTTCTACTGCCTA ACCAAGGATTGCGACAACCAGACGGCTGCAGTCCATGTGTCGAACGTGGTGTACGAGAACATCAAAGGGACATACGACACTCGTAGCCCTCCGATGCACT TTGGGTGCAGCGATTCAATCCCCTGTACCAACTTGACCATATCAGAAGTAGAGCTTCTCCCCGCAAAAGGCAACGTCGTTTCGGATGCCTACTGCTGGAA TGCATATGGAGATCTTGAGACACTCACAATCCCTCCTGTTTCTTGCCTAATGGAGGGATCTCCTACTCGATCCATACTAGCTGATCATACCGCAGATCGT TGTTTGTAG
AA sequence Show only first row Show all	>Lus10038059 pacid=23163868 polypeptide=Lus10038059 locus=Lus10038059.g ID=Lus10038059.BGIv1.0 annot-version=v1.0 MELFPILLTIIIATTITSMTQARFHYHNHDHHHTKHNHPSQNGGLISYISSPPTLPPDDLESPSPNSPQPFPPPRPKSATLISPPTPAPAPAPANAYDDG QGVLDVRRFGAIGDGITDDTIAFKMAWDAACQLGSSVIRVPKGLTFMIQSTIFTGPCQSGVIFQVDGTITPPDGPDSWPEKNSKKQWLVFYKVNEMSLVG GGGFNGRGQKWWDLPCKPHKVVINGTKPRGPCDSPIAIRFFMSSNLTVEGIRLKDSPQFNFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVGIYN SIVSNGDDCVSIGSGCYDVDIRNVTCGPSHGISIGSLGNHNSKACVSNITVRDSTIRASDNGVRIKTWQGGSGAVSGITFSNIHMDNVRNPIIIDQFYCL TKDCDNQTAAVHVSNVVYENIKGTYDTRSPPMHFGCSDSIPCTNLTISEVELLPAKGNVVSDAYCWNAYGDLETLTIPPVSCLMEGSPTRSILADHTADR CL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	0	1
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	1.4	0.9649
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	5.1	0.9316
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	6.3	0.9495
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	8.4	0.8994
AT3G19990			unknown protein		Lus10028680 [exp]	8.4	0.9545
AT4G28000			P-loop containing nucleoside t...		Lus10005736 [exp]	8.5	0.9219
					Lus10012972 [exp]	9.2	0.9098
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	11.3	0.9009
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	11.5	0.9522
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	12.3	0.9439

Compare expression of checked genes

Lus10038059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.